OpenMS  2.7.0
SingleLinkage.h
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35 #pragma once
36 
37 #include <vector>
38 #include <set>
39 #include <limits>
40 #include <algorithm>
41 
45 
46 namespace OpenMS
47 {
57  class OPENMS_DLLAPI SingleLinkage :
58  public ClusterFunctor, public ProgressLogger
59  {
60 public:
61 
64 
66  SingleLinkage(const SingleLinkage & source);
67 
69  ~SingleLinkage() override;
70 
73 
84  void operator()(DistanceMatrix<float> & original_distance, std::vector<BinaryTreeNode> & cluster_tree, const float threshold = 1) const override;
85 
87  static ClusterFunctor * create();
88 
90  static const String getProductName();
91  };
92 
93 
94 
95 }
Base class for cluster functors.
Definition: ClusterFunctor.h:54
A two-dimensional distance matrix, similar to OpenMS::Matrix.
Definition: DistanceMatrix.h:68
Base class for all classes that want to report their progress.
Definition: ProgressLogger.h:55
SingleLinkage ClusterMethod.
Definition: SingleLinkage.h:59
SingleLinkage & operator=(const SingleLinkage &source)
assignment operator
SingleLinkage(const SingleLinkage &source)
copy constructor
SingleLinkage()
default constructor
void operator()(DistanceMatrix< float > &original_distance, std::vector< BinaryTreeNode > &cluster_tree, const float threshold=1) const override
clusters the indices according to their respective element distances
static ClusterFunctor * create()
creates a new instance of a SingleLinkage object
~SingleLinkage() override
destructor
static const String getProductName()
get the identifier for this object
A more convenient string class.
Definition: String.h:61
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47