TwoDOptimization.h File Reference

#include <vector>
#include <utility>
#include <cmath>
#include <set>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakShape.h>
#include <OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/KERNEL/MSSpectrum.h>
#include <OpenMS/KERNEL/PeakIndex.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/DATASTRUCTURES/IsotopeCluster.h>
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/MATH/MISC/MathFunctions.h>
#include <Eigen/Core>
#include <unsupported/Eigen/NonLinearOptimization>
#include <boost/math/special_functions/acosh.hpp>
#include <OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePick.h>

Include dependency graph for TwoDOptimization.h:

Go to the source code of this file.

Classes
class	TwoDOptimization
	This class provides the two-dimensional optimization of the picked peak parameters. More...
struct	TwoDOptimization::Data
	Helper struct (contains the size of an area and a raw data container) More...
class	TwoDOptimization::TwoDOptFunctor

Namespaces
	OpenMS
	Main OpenMS namespace.

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Class Documentation

OpenMS::TwoDOptimization::Data

struct OpenMS::TwoDOptimization::Data

Helper struct (contains the size of an area and a raw data container)

Collaboration diagram for TwoDOptimization::Data:

Class Members
multimap< double, IsotopeCluster >::iterator	iso_map_iter
map< Int, vector< PeakIndex > >	matching_peaks
PenaltyFactorsIntensity	penalties
PeakMap	picked_peaks
vector< double >	positions
ConstIterator	raw_data_first
vector< double >	signal
vector< pair< SignedSize, SignedSize > >	signal2D
Size	total_nr_peaks