Information about OpenMS' internal databases

This util prints the content of OpenMS' enzyme and modification databases to a TSV file. The command line parameters of this tool are:

OpenMSDatabasesInfo -- Prints the content of OpenMS' enzyme and modification databases to TSV
Full documentation: http://www.openms.de/doxygen/release/2.7.0/html/UTILS_OpenMSDatabasesInfo.html
Version: 2.7.0 Sep 13 2021, 20:58:47, Revision: 9110e58
To cite OpenMS:
  Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959.

Usage:
  OpenMSDatabasesInfo <options>

Options (mandatory options marked with '*'):
  -enzymes_out <out>*  Currently supported enzymes as TSV (valid formats: 'tsv')
  -mods_out <out>*     Currently supported modifications as TSV (valid formats: 'tsv')
                       
Common UTIL options:
  -ini <file>          Use the given TOPP INI file
  -threads <n>         Sets the number of threads allowed to be used by the TOPP tool (default: '1')
  -write_ini <file>    Writes the default configuration file
  --help               Shows options
  --helphelp           Shows all options (including advanced)

INI file documentation of this tool:

Legend:

required parameter

advanced parameter

+OpenMSDatabasesInfoPrints the content of OpenMS' enzyme and modification databases to TSV

version2.7.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'OpenMSDatabasesInfo'

enzymes_out Currently supported enzymes as TSVoutput file*.tsv

mods_out Currently supported modifications as TSVoutput file*.tsv

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

forcefalse Overrides tool-specific checkstrue,false

testfalse Enables the test mode (needed for internal use only)true,false