 |
OpenMS
2.7.0
|
This is the complete list of members for AbsoluteQuantitation, including all inherited members.
| AbsoluteQuantitation() | AbsoluteQuantitation | |
| applyCalibration(const Feature &component, const Feature &IS_component, const String &feature_name, const String &transformation_model, const Param &transformation_model_params) | AbsoluteQuantitation | |
| calculateBias(const double &actual_concentration, const double &calculated_concentration) | AbsoluteQuantitation | |
| calculateBiasAndR(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params, std::vector< double > &biases, double &correlation_coefficient) | AbsoluteQuantitation | |
| calculateRatio(const Feature &component_1, const Feature &component_2, const String &feature_name) | AbsoluteQuantitation | |
| check_defaults_ | DefaultParamHandler | protected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| error_name_ | DefaultParamHandler | protected |
| extractComponents_(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const std::vector< size_t > &component_concentrations_indices) | AbsoluteQuantitation | protected |
| fitCalibration(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params) | AbsoluteQuantitation | |
| getDefaults() const | DefaultParamHandler | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getQuantMethods() | AbsoluteQuantitation | |
| getQuantMethodsAsMap() | AbsoluteQuantitation | |
| getSubsections() const | DefaultParamHandler | |
| jackknifeOutlierCandidate_(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params) | AbsoluteQuantitation | protected |
| max_bias_ | AbsoluteQuantitation | private |
| max_iters_ | AbsoluteQuantitation | private |
| min_correlation_coefficient_ | AbsoluteQuantitation | private |
| min_points_ | AbsoluteQuantitation | private |
| operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| optimization_method_ | AbsoluteQuantitation | private |
| optimizeCalibrationCurveIterative(std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params, Param &optimized_params) | AbsoluteQuantitation | |
| optimizeCalibrationCurves(std::map< String, std::vector< AbsoluteQuantitationStandards::featureConcentration >> &components_concentrations) | AbsoluteQuantitation | |
| optimizeSingleCalibrationCurve(const String &component_name, std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations) | AbsoluteQuantitation | |
| outlier_detection_method_ | AbsoluteQuantitation | private |
| param_ | DefaultParamHandler | protected |
| quant_methods_ | AbsoluteQuantitation | private |
| quantifyComponents(FeatureMap &unknowns) | AbsoluteQuantitation | |
| residualOutlierCandidate_(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params) | AbsoluteQuantitation | protected |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setQuantMethods(std::vector< AbsoluteQuantitationMethod > &quant_methods) | AbsoluteQuantitation | |
| subsections_ | DefaultParamHandler | protected |
| updateMembers_() | AbsoluteQuantitation | privatevirtual |
| use_chauvenet_ | AbsoluteQuantitation | private |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="") | DefaultParamHandler | static |
| ~AbsoluteQuantitation() | AbsoluteQuantitation | |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
1.9.1
