apply(std::vector< PeptideIdentification > &ids, const std::map< String, String > &se_info, Size number_of_runs=0) | ConsensusIDAlgorithm | |
apply(std::vector< PeptideIdentification > &ids, Size number_of_runs=0) | ConsensusIDAlgorithm | |
apply_(std::vector< PeptideIdentification > &ids, const std::map< String, String > &se_info, SequenceGrouping &results) override | ConsensusIDAlgorithmSimilarity | privatevirtual |
check_defaults_ | DefaultParamHandler | protected |
compareChargeStates_(Int &recorded_charge, Int new_charge, const AASequence &peptide) | ConsensusIDAlgorithm | protected |
ConsensusIDAlgorithm() | ConsensusIDAlgorithm | protected |
ConsensusIDAlgorithm(const ConsensusIDAlgorithm &) | ConsensusIDAlgorithm | private |
ConsensusIDAlgorithmPEPIons() | ConsensusIDAlgorithmPEPIons | |
ConsensusIDAlgorithmPEPIons(const ConsensusIDAlgorithmPEPIons &) | ConsensusIDAlgorithmPEPIons | private |
ConsensusIDAlgorithmSimilarity() | ConsensusIDAlgorithmSimilarity | protected |
ConsensusIDAlgorithmSimilarity(const ConsensusIDAlgorithmSimilarity &) | ConsensusIDAlgorithmSimilarity | private |
considered_hits_ | ConsensusIDAlgorithm | protected |
count_empty_ | ConsensusIDAlgorithm | protected |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
DefaultParamHandler() | DefaultParamHandler | private |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
error_name_ | DefaultParamHandler | protected |
getDefaults() const | DefaultParamHandler | |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getSimilarity_(AASequence seq1, AASequence seq2) override | ConsensusIDAlgorithmPEPIons | privatevirtual |
getSubsections() const | DefaultParamHandler | |
keep_old_scores_ | ConsensusIDAlgorithm | protected |
mass_tolerance_ | ConsensusIDAlgorithmPEPIons | private |
min_shared_ | ConsensusIDAlgorithmPEPIons | private |
min_support_ | ConsensusIDAlgorithm | protected |
number_of_runs_ | ConsensusIDAlgorithm | protected |
operator=(const ConsensusIDAlgorithmPEPIons &) | ConsensusIDAlgorithmPEPIons | private |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
SequenceGrouping typedef | ConsensusIDAlgorithm | protected |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
similarities_ | ConsensusIDAlgorithmSimilarity | protected |
SimilarityCache typedef | ConsensusIDAlgorithmSimilarity | protected |
subsections_ | DefaultParamHandler | protected |
updateMembers_() override | ConsensusIDAlgorithmPEPIons | privatevirtual |
warn_empty_defaults_ | DefaultParamHandler | protected |
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="") | DefaultParamHandler | static |
~ConsensusIDAlgorithm() override | ConsensusIDAlgorithm | |
~DefaultParamHandler() | DefaultParamHandler | virtual |