OpenMS  2.7.0
FeatureXMLFile Member List

This is the complete list of members for FeatureXMLFile, including all inherited members.

accession_to_id_FeatureXMLFileprotected
ActionMode enum nameXMLHandlerprotected
asBool_(const String &in) constXMLHandlerinlineprotected
asDateTime_(String date_string) constXMLHandlerinlineprotected
asDouble_(const String &in) constXMLHandlerinlineprotected
asFloat_(const String &in) constXMLHandlerinlineprotected
asInt_(const String &in) constXMLHandlerinlineprotected
asInt_(const XMLCh *in) constXMLHandlerinlineprotected
asUInt_(const String &in) constXMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
characters(const XMLCh *const chars, const XMLSize_t length) overrideFeatureXMLFileprotected
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids)XMLHandlerprotected
CMD enum valueProgressLogger
current_chull_FeatureXMLFileprotected
current_feature_FeatureXMLFileprotected
current_logger_ProgressLoggermutableprotected
cv_terms_XMLHandlerprotected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)XMLHandlerinlineprotected
dim_FeatureXMLFileprotected
disable_parsing_FeatureXMLFileprotected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) overrideFeatureXMLFileprotected
endProgress() constProgressLogger
enforced_encoding_XMLFileprotected
enforceEncoding_(const String &encoding)XMLFileprotected
equal_(const XMLCh *a, const XMLCh *b) constXMLHandlerinlineprotected
error(const xercesc::SAXParseException &exception) overrideXMLHandlerprotected
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandlerprotected
error_message_XMLHandlermutableprotected
errorString()XMLHandlerprotected
expected_size_FeatureXMLFileprotected
expectList_(const String &str) constXMLHandlerinlineprivate
fatalError(const xercesc::SAXParseException &exception) overrideXMLHandlerprotected
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandlerprotected
FeatureXMLFile()FeatureXMLFile
file_XMLHandlerprotected
getLoadDetail() constXMLHandlerprotectedvirtual
getLogType() constProgressLogger
getOptions()FeatureXMLFile
getOptions() constFeatureXMLFile
getVersion() constXMLFile
GUI enum valueProgressLogger
hull_position_FeatureXMLFileprotected
id_identifier_FeatureXMLFileprotected
identifier_id_FeatureXMLFileprotected
in_description_FeatureXMLFileprotected
isValid(const String &filename, std::ostream &os)XMLFile
last_invoke_ProgressLoggermutableprotected
last_meta_FeatureXMLFileprotected
LD_ALLDATA enum valueXMLHandlerprotected
LD_COUNTS_WITHOPTIONS enum valueXMLHandlerprotected
LD_RAWCOUNTS enum valueXMLHandlerprotected
LOAD enum valueXMLHandlerprotected
load(const String &filename, FeatureMap &feature_map)FeatureXMLFile
load_detail_XMLHandlerprotected
LOADDETAIL enum nameXMLHandlerprotected
loadSize(const String &filename)FeatureXMLFile
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
map_FeatureXMLFileprotected
nextProgress() constProgressLogger
NONE enum valueProgressLogger
open_tags_XMLHandlerprotected
operator=(const ProgressLogger &other)ProgressLogger
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
options_FeatureXMLFileprotected
param_FeatureXMLFileprotected
parse_(const String &filename, XMLHandler *handler)XMLFileprotected
parseBuffer_(const std::string &buffer, XMLHandler *handler)XMLFileprotected
pep_hit_FeatureXMLFileprotected
pep_id_FeatureXMLFileprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
prot_hit_FeatureXMLFileprotected
prot_id_FeatureXMLFileprotected
proteinid_to_accession_FeatureXMLFileprotected
recursion_depth_ProgressLoggerprotectedstatic
reset()XMLHandlerprotected
resetMembers_()FeatureXMLFileprotected
save_(const String &filename, XMLHandler *handler) constXMLFileprotected
schema_location_XMLFileprotected
schema_version_XMLFileprotected
search_param_FeatureXMLFileprotected
setLoadDetail(const LOADDETAIL d)XMLHandlerprotectedvirtual
setLogType(LogType type) constProgressLogger
setOptions(const FeatureFileOptions &)FeatureXMLFile
setProgress(SignedSize value) constProgressLogger
size_only_FeatureXMLFileprotected
sm_XMLHandlerprotected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) overrideFeatureXMLFileprotected
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
store(const String &filename, const FeatureMap &feature_map)FeatureXMLFile
STORE enum valueXMLHandlerprotected
subordinate_feature_level_FeatureXMLFileprotected
type_ProgressLoggermutableprotected
updateCurrentFeature_(bool create)FeatureXMLFileprotected
version_XMLHandlerprotected
warning(const xercesc::SAXParseException &exception) overrideXMLHandlerprotected
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandlerprotected
writeFeature_(const String &filename, std::ostream &os, const Feature &feat, const String &identifier_prefix, UInt64 identifier, UInt indentation_level)FeatureXMLFileprotected
writePeptideIdentification_(const String &filename, std::ostream &os, const PeptideIdentification &id, const String &tag_name, UInt indentation_level)FeatureXMLFileprotected
writeTo(std::ostream &)XMLHandlerprotectedvirtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) constXMLHandlerprotected
writeXMLEscape(const String &to_escape)XMLHandlerinlineprotectedstatic
XMLFile()XMLFile
XMLFile(const String &schema_location, const String &version)XMLFile
XMLHandler(const String &filename, const String &version)XMLHandlerprotected
XMLHandler()XMLHandlerprivate
~FeatureXMLFile() overrideFeatureXMLFile
~ProgressLogger()ProgressLoggervirtual
~XMLFile()XMLFilevirtual
~XMLHandler() overrideXMLHandlerprotected
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