IdentificationData Member List

This is the complete list of members for IdentificationData, including all inherited members.

addMetaValues(const MetaInfoInterface &from)	MetaInfoInterface
AddressLookup typedef	IdentificationData
addScore(QueryMatchRef match_ref, ScoreTypeRef score_ref, double value)	IdentificationData
AppliedProcessingStep typedef	IdentificationData
AppliedProcessingSteps typedef	IdentificationData
calculateCoverages(bool check_molecule_length=false)	IdentificationData
checkAppliedProcessingSteps_(const AppliedProcessingSteps &steps_and_scores) const	IdentificationData	protected
checkParentMatches_(const ParentMatches &matches, MoleculeType expected_type) const	IdentificationData	protected
checkScoreTypes_(const std::map< ScoreTypeRef, double > &scores) const	IdentificationData	protected
cleanup(bool require_query_match=true, bool require_identified_sequence=true, bool require_parent_match=true, bool require_parent_group=false, bool require_match_group=false)	IdentificationData
clearCurrentProcessingStep()	IdentificationData
clearMetaInfo()	MetaInfoInterface
createIfNotExists_()	MetaInfoInterface	inlineprotected
current_step_ref_	IdentificationData	protected
data_queries_	IdentificationData	protected
data_query_lookup_	IdentificationData	protected
DataProcessingSoftware typedef	IdentificationData
DataProcessingSoftwares typedef	IdentificationData
DataProcessingStep typedef	IdentificationData
DataProcessingSteps typedef	IdentificationData
DataQueries typedef	IdentificationData
DataQuery typedef	IdentificationData
DataQueryRef typedef	IdentificationData
db_search_params_	IdentificationData	protected
db_search_steps_	IdentificationData	protected
DBSearchParam typedef	IdentificationData
DBSearchParams typedef	IdentificationData
DBSearchSteps typedef	IdentificationData
findScoreType(const String &score_name) const	IdentificationData
getBestMatchPerQuery(ScoreTypeRef score_ref) const	IdentificationData
getCurrentProcessingStep()	IdentificationData
getDataProcessingSoftwares() const	IdentificationData	inline
getDataProcessingSteps() const	IdentificationData	inline
getDataQueries() const	IdentificationData	inline
getDBSearchParams() const	IdentificationData	inline
getDBSearchSteps() const	IdentificationData	inline
getIdentifiedCompounds() const	IdentificationData	inline
getIdentifiedOligos() const	IdentificationData	inline
getIdentifiedPeptides() const	IdentificationData	inline
getInputFiles() const	IdentificationData	inline
getKeys(std::vector< String > &keys) const	MetaInfoInterface
getKeys(std::vector< UInt > &keys) const	MetaInfoInterface
getMetaValue(const String &name, const DataValue &default_value=DataValue::EMPTY) const	MetaInfoInterface
getMetaValue(UInt index, const DataValue &default_value=DataValue::EMPTY) const	MetaInfoInterface
getMoleculeQueryMatches() const	IdentificationData	inline
getParentMoleculeGroupings() const	IdentificationData	inline
getParentMolecules() const	IdentificationData	inline
getQueryMatchGroups() const	IdentificationData	inline
getScoreTypes() const	IdentificationData	inline
IdentificationData()	IdentificationData	inline
IdentificationData(const IdentificationData &other)=delete	IdentificationData
IdentificationData(IdentificationData &&other)	IdentificationData	inline
identified_compound_lookup_	IdentificationData	protected
identified_compounds_	IdentificationData	protected
identified_oligo_lookup_	IdentificationData	protected
identified_oligos_	IdentificationData	protected
identified_peptide_lookup_	IdentificationData	protected
identified_peptides_	IdentificationData	protected
IdentifiedCompound typedef	IdentificationData
IdentifiedCompoundRef typedef	IdentificationData
IdentifiedCompounds typedef	IdentificationData
IdentifiedMoleculeRef typedef	IdentificationData
IdentifiedOligo typedef	IdentificationData
IdentifiedOligoRef typedef	IdentificationData
IdentifiedOligos typedef	IdentificationData
IdentifiedPeptide typedef	IdentificationData
IdentifiedPeptideRef typedef	IdentificationData
IdentifiedPeptides typedef	IdentificationData
IDFilter class	IdentificationData	friend
input_files_	IdentificationData	protected
InputFileRef typedef	IdentificationData
InputFiles typedef	IdentificationData
insertIntoMultiIndex_(ContainerType &container, const ElementType &element)	IdentificationData	inlineprotected
insertIntoMultiIndex_(ContainerType &container, const ElementType &element, AddressLookup &lookup)	IdentificationData	inlineprotected
isBetterScore(double first, double second, bool higher_better)	IdentificationData	inlinestatic
isMetaEmpty() const	MetaInfoInterface
isValidHashedReference_(RefType ref, const AddressLookup &lookup)	IdentificationData	inlineprotectedstatic
isValidReference_(RefType ref, ContainerType &container)	IdentificationData	inlineprotectedstatic
MassType typedef	IdentificationData
MatchGroupRef typedef	IdentificationData
meta_	MetaInfoInterface	protected
MetaInfoInterface()	MetaInfoInterface
MetaInfoInterface(const MetaInfoInterface &rhs)	MetaInfoInterface
MetaInfoInterface(MetaInfoInterface &&) noexcept	MetaInfoInterface
metaRegistry()	MetaInfoInterface	static
metaValueExists(const String &name) const	MetaInfoInterface
metaValueExists(UInt index) const	MetaInfoInterface
MoleculeParentMatch typedef	IdentificationData
MoleculeQueryMatch typedef	IdentificationData
MoleculeQueryMatches typedef	IdentificationData
MoleculeType typedef	IdentificationData
operator!=(const MetaInfoInterface &rhs) const	MetaInfoInterface
operator=(const MetaInfoInterface &rhs)	MetaInfoInterface
operator=(MetaInfoInterface &&) noexcept	MetaInfoInterface
operator==(const MetaInfoInterface &rhs) const	MetaInfoInterface
parent_molecule_groupings_	IdentificationData	protected
parent_molecule_lookup_	IdentificationData	protected
parent_molecules_	IdentificationData	protected
ParentGroupRef typedef	IdentificationData
ParentMatches typedef	IdentificationData
ParentMolecule typedef	IdentificationData
ParentMoleculeGroup typedef	IdentificationData
ParentMoleculeGrouping typedef	IdentificationData
ParentMoleculeGroupings typedef	IdentificationData
ParentMoleculeGroups typedef	IdentificationData
ParentMoleculeRef typedef	IdentificationData
ParentMolecules typedef	IdentificationData
PeakAnnotations typedef	IdentificationData
processing_softwares_	IdentificationData	protected
processing_steps_	IdentificationData	protected
ProcessingSoftwareRef typedef	IdentificationData
ProcessingStepRef typedef	IdentificationData
query_match_groups_	IdentificationData	protected
query_match_lookup_	IdentificationData	protected
query_matches_	IdentificationData	protected
QueryMatchGroup typedef	IdentificationData
QueryMatchGroups typedef	IdentificationData
QueryMatchRef typedef	IdentificationData
registerDataProcessingSoftware(const DataProcessingSoftware &software)	IdentificationData
registerDataProcessingStep(const DataProcessingStep &step)	IdentificationData
registerDataProcessingStep(const DataProcessingStep &step, SearchParamRef search_ref)	IdentificationData
registerDataQuery(const DataQuery &query)	IdentificationData
registerDBSearchParam(const DBSearchParam &param)	IdentificationData
registerIdentifiedCompound(const IdentifiedCompound &compound)	IdentificationData
registerIdentifiedOligo(const IdentifiedOligo &oligo)	IdentificationData
registerIdentifiedPeptide(const IdentifiedPeptide &peptide)	IdentificationData
registerInputFile(const String &file)	IdentificationData
registerMoleculeQueryMatch(const MoleculeQueryMatch &match)	IdentificationData
registerParentMolecule(const ParentMolecule &parent)	IdentificationData
registerParentMoleculeGrouping(const ParentMoleculeGrouping &grouping)	IdentificationData
registerQueryMatchGroup(const QueryMatchGroup &group)	IdentificationData
registerScoreType(const ScoreType &score)	IdentificationData
removeFromSetIf_(ContainerType &container, PredicateType predicate)	IdentificationData	inlineprotectedstatic
removeFromSetIfNotHashed_(ContainerType &container, const AddressLookup &lookup)	IdentificationData	inlineprotectedstatic
removeMetaValue(const String &name)	MetaInfoInterface
removeMetaValue(UInt index)	MetaInfoInterface
score_types_	IdentificationData	protected
ScoreType typedef	IdentificationData
ScoreTypeRef typedef	IdentificationData
ScoreTypes typedef	IdentificationData
SearchParamRef typedef	IdentificationData
setCurrentProcessingStep(ProcessingStepRef step_ref)	IdentificationData
setMetaValue(const String &name, const DataValue &value)	MetaInfoInterface
setMetaValue(UInt index, const DataValue &value)	MetaInfoInterface
updateAddressLookup_(const ContainerType &container, AddressLookup &lookup)	IdentificationData	inlineprotectedstatic
~MetaInfoInterface()	MetaInfoInterface