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OpenMS
2.7.0
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This is the complete list of members for IDBoostGraph, including all inherited members.
| addPeptideAndAssociatedProteinsWithRunInfo_(PeptideIdentification &spectrum, std::unordered_map< unsigned, unsigned > &indexToPrefractionationGroup, std::unordered_map< IDPointer, vertex_t, boost::hash< IDPointer >> &vertex_map, std::unordered_map< std::string, ProteinHit * > &accession_map, Size use_top_psms) | IDBoostGraph | private |
| addPeptideIDWithAssociatedProteins_(PeptideIdentification &spectrum, std::unordered_map< IDPointer, vertex_t, boost::hash< IDPointer >> &vertex_map, const std::unordered_map< std::string, ProteinHit * > &accession_map, Size use_top_psms, bool best_psms_annotated) | IDBoostGraph | private |
| addVertexWithLookup_(const IDPointer &ptr, std::unordered_map< IDPointer, vertex_t, boost::hash< IDPointer >> &vertex_map) | IDBoostGraph | private |
| annotateIndistProteins(bool addSingletons=true) | IDBoostGraph | |
| annotateIndistProteins_(const Graph &fg, bool addSingletons) | IDBoostGraph | private |
| applyFunctorOnCCs(const std::function< unsigned long(Graph &, unsigned int)> &functor) | IDBoostGraph | |
| applyFunctorOnCCsST(const std::function< void(Graph &)> &functor) | IDBoostGraph | |
| buildGraph_(ProteinIdentification &proteins, std::vector< PeptideIdentification > &idedSpectra, Size use_top_psms, bool best_psms_annotated=false) | IDBoostGraph | private |
| buildGraph_(ProteinIdentification &proteins, ConsensusMap &cmap, Size use_top_psms, bool use_unassigned_ids, bool best_psms_annotated=false) | IDBoostGraph | private |
| buildGraphWithRunInfo_(ProteinIdentification &proteins, ConsensusMap &cmap, Size use_top_psms, bool use_unassigned_ids, const ExperimentalDesign &ed) | IDBoostGraph | private |
| buildGraphWithRunInfo_(ProteinIdentification &proteins, std::vector< PeptideIdentification > &idedSpectra, Size use_top_psms, const ExperimentalDesign &ed) | IDBoostGraph | private |
| calculateAndAnnotateIndistProteins(bool addSingletons=true) | IDBoostGraph | |
| calculateAndAnnotateIndistProteins_(const Graph &fg, bool addSingletons) | IDBoostGraph | private |
| ccs_ | IDBoostGraph | private |
| clusterIndistProteinsAndPeptides() | IDBoostGraph | |
| clusterIndistProteinsAndPeptidesAndExtendGraph() | IDBoostGraph | |
| computeConnectedComponents() | IDBoostGraph | |
| edge_t typedef | IDBoostGraph | |
| g | IDBoostGraph | private |
| getComponent(Size cc) | IDBoostGraph | |
| getDownstreamNodes(const vertex_t &start, const Graph &graph, std::vector< NodeType > &result) | IDBoostGraph | inlineprivate |
| getDownstreamNodesNonRecursive(std::queue< vertex_t > &q, const Graph &graph, int lvl, bool stop_at_first, std::vector< vertex_t > &result) | IDBoostGraph | |
| getNrConnectedComponents() | IDBoostGraph | |
| getProteinGroupScoresAndHitchhikingTgtFraction(ScoreToTgtDecLabelPairs &scores_and_tgt_fraction) | IDBoostGraph | |
| getProteinGroupScoresAndTgtFraction(ScoreToTgtDecLabelPairs &scores_and_tgt_fraction) | IDBoostGraph | |
| getProteinIDs() | IDBoostGraph | |
| getProteinScores_(ScoreToTgtDecLabelPairs &scores_and_tgt) | IDBoostGraph | |
| getUpstreamNodes(const vertex_t &start, const Graph graph, std::vector< NodeType > &result) | IDBoostGraph | inlineprivate |
| getUpstreamNodesNonRecursive(std::queue< vertex_t > &q, const Graph &graph, int lvl, bool stop_at_first, std::vector< vertex_t > &result) | IDBoostGraph | |
| Graph typedef | IDBoostGraph | |
| GraphConst typedef | IDBoostGraph | |
| Graphs typedef | IDBoostGraph | |
| IDBoostGraph(ProteinIdentification &proteins, std::vector< PeptideIdentification > &idedSpectra, Size use_top_psms, bool use_run_info, bool best_psms_annotated, const boost::optional< const ExperimentalDesign > &ed=boost::optional< const ExperimentalDesign >()) | IDBoostGraph | |
| IDBoostGraph(ProteinIdentification &proteins, ConsensusMap &cmap, Size use_top_psms, bool use_run_info, bool use_unassigned_ids, bool best_psms_annotated, const boost::optional< const ExperimentalDesign > &ed=boost::optional< const ExperimentalDesign >()) | IDBoostGraph | |
| IDPointer typedef | IDBoostGraph | |
| IDPointerConst typedef | IDBoostGraph | |
| nrPrefractionationGroups_ | IDBoostGraph | private |
| pepHitVtx_to_run_ | IDBoostGraph | private |
| PeptideNodeSet typedef | IDBoostGraph | |
| printGraph(std::ostream &out, const Graph &fg) | IDBoostGraph | static |
| ProteinNodeSet typedef | IDBoostGraph | |
| protIDs_ | IDBoostGraph | private |
| resolveGraphPeptideCentric(bool removeAssociationsInData=true) | IDBoostGraph | |
| resolveGraphPeptideCentric_(Graph &fg, bool removeAssociationsInData) | IDBoostGraph | private |
| vertex_t typedef | IDBoostGraph |
1.9.1
