MzIdentMLDOMHandler Member List

This is the complete list of members for MzIdentMLDOMHandler, including all inherited members.

as_map_	MzIdentMLDOMHandler	private
buildAnalysisCollection_(xercesc::DOMElement *analysisCollectionElements)	MzIdentMLDOMHandler	protected
buildAnalysisDataCollection_(xercesc::DOMElement *analysisElements)	MzIdentMLDOMHandler	protected
buildAnalysisProtocolCollection_(xercesc::DOMElement *protocolElements)	MzIdentMLDOMHandler	protected
buildAnalysisSoftwareList_(xercesc::DOMElement *analysisSoftwareElements)	MzIdentMLDOMHandler	protected
buildCvList_(xercesc::DOMElement *cvElements)	MzIdentMLDOMHandler	protected
buildEnclosedCV_(xercesc::DOMElement *parentElement, const String &encel, const String &acc, const String &name, const String &cvref)	MzIdentMLDOMHandler	protected
buildInputDataCollection_(xercesc::DOMElement *inputElements)	MzIdentMLDOMHandler	protected
buildSequenceCollection_(xercesc::DOMElement *sequenceCollectionElements)	MzIdentMLDOMHandler	protected
cpep_id_	MzIdentMLDOMHandler	protected
cpro_id_	MzIdentMLDOMHandler	protected
cv_	MzIdentMLDOMHandler	protected
db_map_	MzIdentMLDOMHandler	private
db_sq_map_	MzIdentMLDOMHandler	private
findSearchParameters_(std::pair< CVTermList, std::map< String, DataValue > > as_params)	MzIdentMLDOMHandler	protectedstatic
getChildWithName_(const String &parent_accession, const String &name) const	MzIdentMLDOMHandler	protected
hit_pev_	MzIdentMLDOMHandler	private
logger_	MzIdentMLDOMHandler	protected
mzid_parser_	MzIdentMLDOMHandler	private
MzIdentMLDOMHandler(const std::vector< ProteinIdentification > &pro_id, const std::vector< PeptideIdentification > &pep_id, const String &version, const ProgressLogger &logger)	MzIdentMLDOMHandler
MzIdentMLDOMHandler(std::vector< ProteinIdentification > &pro_id, std::vector< PeptideIdentification > &pep_id, const String &version, const ProgressLogger &logger)	MzIdentMLDOMHandler
MzIdentMLDOMHandler()	MzIdentMLDOMHandler	private
MzIdentMLDOMHandler(const MzIdentMLDOMHandler &rhs)	MzIdentMLDOMHandler	private
operator=(const MzIdentMLDOMHandler &rhs)	MzIdentMLDOMHandler	private
p_pv_map_	MzIdentMLDOMHandler	private
parseAnalysisSoftwareList_(xercesc::DOMNodeList *analysisSoftwareElements)	MzIdentMLDOMHandler	protected
parseCvParam_(xercesc::DOMElement *param)	MzIdentMLDOMHandler	protected
parseDBSequenceElements_(xercesc::DOMNodeList *dbSequenceElements)	MzIdentMLDOMHandler	protected
parseInputElements_(xercesc::DOMNodeList *inputElements)	MzIdentMLDOMHandler	protected
parseParamGroup_(xercesc::DOMNodeList *paramGroup)	MzIdentMLDOMHandler	protected
parsePeptideElements_(xercesc::DOMNodeList *peptideElements)	MzIdentMLDOMHandler	protected
parsePeptideEvidenceElements_(xercesc::DOMNodeList *peptideEvidenceElements)	MzIdentMLDOMHandler	protected
parsePeptideSiblings_(xercesc::DOMElement *peptide)	MzIdentMLDOMHandler	protected
parseProteinAmbiguityGroupElement_(xercesc::DOMElement *proteinAmbiguityGroupElement, ProteinIdentification &protein_identification)	MzIdentMLDOMHandler	protected
parseProteinDetectionHypothesisElement_(xercesc::DOMElement *proteinDetectionHypothesisElement, ProteinIdentification &protein_identification)	MzIdentMLDOMHandler	protected
parseProteinDetectionListElements_(xercesc::DOMNodeList *proteinDetectionListElements)	MzIdentMLDOMHandler	protected
parseSpectrumIdentificationElements_(xercesc::DOMNodeList *spectrumIdentificationElements)	MzIdentMLDOMHandler	protected
parseSpectrumIdentificationItemElement_(xercesc::DOMElement *spectrumIdentificationItemElement, PeptideIdentification &spectrum_identification, String &spectrumIdentificationList_ref)	MzIdentMLDOMHandler	protected
parseSpectrumIdentificationItemSetXLMS(std::set< String >::const_iterator set_it, std::multimap< String, int > xl_val_map, xercesc::DOMElement *element_res, String spectrumID)	MzIdentMLDOMHandler	protected
parseSpectrumIdentificationListElements_(xercesc::DOMNodeList *spectrumIdentificationListElements)	MzIdentMLDOMHandler	protected
parseSpectrumIdentificationProtocolElements_(xercesc::DOMNodeList *spectrumIdentificationProtocolElements)	MzIdentMLDOMHandler	protected
parseUserParam_(xercesc::DOMElement *param)	MzIdentMLDOMHandler	protected
pe_ev_map_	MzIdentMLDOMHandler	private
pep_id_	MzIdentMLDOMHandler	protected
pep_map_	MzIdentMLDOMHandler	private
pro_id_	MzIdentMLDOMHandler	protected
pv_db_map_	MzIdentMLDOMHandler	private
readMzIdentMLFile(const std::string &mzid_file)	MzIdentMLDOMHandler
schema_version_	MzIdentMLDOMHandler	protected
sd_map_	MzIdentMLDOMHandler	private
search_engine_	MzIdentMLDOMHandler	private
search_engine_version_	MzIdentMLDOMHandler	private
si_map_	MzIdentMLDOMHandler	private
si_pro_map_	MzIdentMLDOMHandler	private
sp_map_	MzIdentMLDOMHandler	private
sr_map_	MzIdentMLDOMHandler	private
unimod_	MzIdentMLDOMHandler	protected
writeMzIdentMLFile(const std::string &mzid_file)	MzIdentMLDOMHandler
xl_acceptor_pos_map_	MzIdentMLDOMHandler	private
xl_donor_pos_map_	MzIdentMLDOMHandler	private
xl_id_acceptor_map_	MzIdentMLDOMHandler	private
xl_id_donor_map_	MzIdentMLDOMHandler	private
xl_mass_map_	MzIdentMLDOMHandler	private
xl_mod_map_	MzIdentMLDOMHandler	private
xl_ms_search_	MzIdentMLDOMHandler	private
xml_cvparam_tag_ptr_	MzIdentMLDOMHandler	private
xml_name_attr_ptr_	MzIdentMLDOMHandler	private
xml_root_tag_ptr_	MzIdentMLDOMHandler	private
~MzIdentMLDOMHandler()	MzIdentMLDOMHandler	virtual