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OpenMS
IsobaricChannelExtractor
IsobaricChannelExtractor Member List
This is the complete list of members for
IsobaricChannelExtractor
, including all inherited members.
check_defaults_
DefaultParamHandler
protected
computePrecursorPurity_
(const PeakMap::ConstIterator &ms2_spec, const PuritySate_ &pState) const
IsobaricChannelExtractor
private
computeSingleScanPrecursorPurity_
(const PeakMap::ConstIterator &ms2_spec, const PeakMap::SpectrumType &precursor_spec) const
IsobaricChannelExtractor
private
DefaultParamHandler
(const String &name)
DefaultParamHandler
DefaultParamHandler
(const DefaultParamHandler &rhs)
DefaultParamHandler
DefaultParamHandler
()
DefaultParamHandler
private
defaults_
DefaultParamHandler
protected
defaultsToParam_
()
DefaultParamHandler
protected
error_name_
DefaultParamHandler
protected
extractChannels
(const PeakMap &ms_exp_data, ConsensusMap &consensus_map)
IsobaricChannelExtractor
getActivationMethod_
(const PeakMap::SpectrumType &s) const
IsobaricChannelExtractor
inline
private
getDefaults
() const
DefaultParamHandler
getName
() const
DefaultParamHandler
getParameters
() const
DefaultParamHandler
getSubsections
() const
DefaultParamHandler
hasLowIntensityReporter_
(const ConsensusFeature &cf) const
IsobaricChannelExtractor
private
interpolate_precursor_purity_
IsobaricChannelExtractor
private
IsobaricChannelExtractor
(const IsobaricQuantitationMethod *const quant_method)
IsobaricChannelExtractor
explicit
IsobaricChannelExtractor
(const IsobaricChannelExtractor &other)
IsobaricChannelExtractor
isValidPrecursor_
(const Precursor &precursor) const
IsobaricChannelExtractor
private
keep_unannotated_precursor_
IsobaricChannelExtractor
private
max_precursor_isotope_deviation_
IsobaricChannelExtractor
private
min_precursor_intensity_
IsobaricChannelExtractor
private
min_precursor_purity_
IsobaricChannelExtractor
private
min_reporter_intensity_
IsobaricChannelExtractor
private
operator=
(const IsobaricChannelExtractor &rhs)
IsobaricChannelExtractor
OpenMS::DefaultParamHandler::operator=
(const DefaultParamHandler &rhs)
DefaultParamHandler
virtual
operator==
(const DefaultParamHandler &rhs) const
DefaultParamHandler
virtual
param_
DefaultParamHandler
protected
quant_method_
IsobaricChannelExtractor
private
registerChannelsInOutputMap_
(ConsensusMap &consensus_map)
IsobaricChannelExtractor
private
remove_low_intensity_quantifications_
IsobaricChannelExtractor
private
reporter_mass_shift_
IsobaricChannelExtractor
private
selected_activation_
IsobaricChannelExtractor
private
setDefaultParams_
()
IsobaricChannelExtractor
protected
setName
(const String &name)
DefaultParamHandler
setParameters
(const Param ¶m)
DefaultParamHandler
subsections_
DefaultParamHandler
protected
updateMembers_
() override
IsobaricChannelExtractor
protected
virtual
warn_empty_defaults_
DefaultParamHandler
protected
writeParametersToMetaValues
(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="")
DefaultParamHandler
static
~DefaultParamHandler
()
DefaultParamHandler
virtual
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