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OpenMS
2.7.0
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This is the complete list of members for IsotopeWaveletTransform< PeakType >, including all inherited members.
| av_MZ_spacing_ | IsotopeWaveletTransform< PeakType > | protected |
| Box typedef | IsotopeWaveletTransform< PeakType > | |
| c_mzs_ | IsotopeWaveletTransform< PeakType > | protected |
| c_spacings_ | IsotopeWaveletTransform< PeakType > | protected |
| checkPositionForPlausibility_(const TransSpectrum &candidate, const MSSpectrum &ref, const double seed_mz, const UInt c, const UInt scan_index, const bool check_PPMs, const double transintens, const double prev_score) | IsotopeWaveletTransform< PeakType > | protectedvirtual |
| checkPositionForPlausibility_(const MSSpectrum &candidate, const MSSpectrum &ref, const double seed_mz, const UInt c, const UInt scan_index, const bool check_PPMs, const double transintens, const double prev_score) | IsotopeWaveletTransform< PeakType > | protectedvirtual |
| checkPPMTheoModel_(const MSSpectrum &ref, const double c_mz, const UInt c) | IsotopeWaveletTransform< PeakType > | protectedvirtual |
| closed_boxes_ | IsotopeWaveletTransform< PeakType > | protected |
| clusterSeeds_(const TransSpectrum &candidates, const MSSpectrum &ref, const UInt scan_index, const UInt c, const bool check_PPMs) | IsotopeWaveletTransform< PeakType > | protected |
| clusterSeeds_(const MSSpectrum &candidates, const MSSpectrum &ref, const UInt scan_index, const UInt c, const bool check_PPMs) | IsotopeWaveletTransform< PeakType > | protectedvirtual |
| computeMinSpacing(const MSSpectrum &c_ref) | IsotopeWaveletTransform< PeakType > | virtual |
| data_length_ | IsotopeWaveletTransform< PeakType > | protected |
| end_boxes_ | IsotopeWaveletTransform< PeakType > | protected |
| extendBox_(const PeakMap &map, const Box &box) | IsotopeWaveletTransform< PeakType > | protected |
| from_max_to_left_ | IsotopeWaveletTransform< PeakType > | protected |
| from_max_to_right_ | IsotopeWaveletTransform< PeakType > | protected |
| front_boxes_ | IsotopeWaveletTransform< PeakType > | protected |
| getAvIntens_(const TransSpectrum &scan) | IsotopeWaveletTransform< PeakType > | inlineprotected |
| getAvIntens_(const MSSpectrum &scan) | IsotopeWaveletTransform< PeakType > | inlineprotected |
| getAvMZSpacing_(const MSSpectrum &scan) | IsotopeWaveletTransform< PeakType > | inlineprotected |
| getClosedBoxes() | IsotopeWaveletTransform< PeakType > | inlinevirtual |
| getLinearInterpolation(const typename MSSpectrum::const_iterator &left_iter, const double mz_pos, const typename MSSpectrum::const_iterator &right_iter) | IsotopeWaveletTransform< PeakType > | inline |
| getLinearInterpolation(const double mz_a, const double intens_a, const double mz_pos, const double mz_b, const double intens_b) | IsotopeWaveletTransform< PeakType > | inline |
| getMaxScanSize() const | IsotopeWaveletTransform< PeakType > | inline |
| getMinSpacing() const | IsotopeWaveletTransform< PeakType > | inline |
| getPPMs_(const double mass_a, const double mass_b) const | IsotopeWaveletTransform< PeakType > | inlineprotected |
| getSdIntens_(const TransSpectrum &scan, const double mean) | IsotopeWaveletTransform< PeakType > | inlineprotected |
| getSdIntens_(const MSSpectrum &scan, const double mean) | IsotopeWaveletTransform< PeakType > | inlineprotected |
| getSigma() const | IsotopeWaveletTransform< PeakType > | inline |
| getTransform(MSSpectrum &c_trans, const MSSpectrum &c_ref, const UInt c) | IsotopeWaveletTransform< PeakType > | virtual |
| getTransformHighRes(MSSpectrum &c_trans, const MSSpectrum &c_ref, const UInt c) | IsotopeWaveletTransform< PeakType > | virtual |
| hr_data_ | IsotopeWaveletTransform< PeakType > | protected |
| identifyCharge(const MSSpectrum &candidates, const MSSpectrum &ref, const UInt scan_index, const UInt c, const double ampl_cutoff, const bool check_PPMs) | IsotopeWaveletTransform< PeakType > | virtual |
| indices_ | IsotopeWaveletTransform< PeakType > | protected |
| initializeScan(const MSSpectrum &c_ref, const UInt c=0) | IsotopeWaveletTransform< PeakType > | virtual |
| intenstype_ | IsotopeWaveletTransform< PeakType > | protected |
| interpol_xs_ | IsotopeWaveletTransform< PeakType > | protected |
| interpol_ys_ | IsotopeWaveletTransform< PeakType > | protected |
| IsotopeWaveletTransform(const double min_mz, const double max_mz, const UInt max_charge, const Size max_scan_size=0, const bool hr_data=false, const String intenstype="ref") | IsotopeWaveletTransform< PeakType > | |
| IsotopeWaveletTransform() | IsotopeWaveletTransform< PeakType > | protected |
| mapSeeds2Features(const PeakMap &map, const UInt RT_votes_cutoff) | IsotopeWaveletTransform< PeakType > | |
| max_charge_ | IsotopeWaveletTransform< PeakType > | protected |
| max_mz_cutoff_ | IsotopeWaveletTransform< PeakType > | protected |
| max_num_peaks_per_pattern_ | IsotopeWaveletTransform< PeakType > | protected |
| max_scan_size_ | IsotopeWaveletTransform< PeakType > | protected |
| min_spacing_ | IsotopeWaveletTransform< PeakType > | protected |
| open_boxes_ | IsotopeWaveletTransform< PeakType > | protected |
| peptideMassRule_(const double c_mass) const | IsotopeWaveletTransform< PeakType > | inlineprotected |
| prod_ | IsotopeWaveletTransform< PeakType > | protected |
| psi_ | IsotopeWaveletTransform< PeakType > | protected |
| push2Box_(const double mz, const UInt scan, UInt c, const double score, const double intens, const double rt, const UInt MZ_begin, const UInt MZ_end, const double ref_intens) | IsotopeWaveletTransform< PeakType > | protectedvirtual |
| push2TmpBox_(const double mz, const UInt scan, UInt charge, const double score, const double intens, const double rt, const UInt MZ_begin, const UInt MZ_end) | IsotopeWaveletTransform< PeakType > | protectedvirtual |
| sampleTheCMarrWavelet_(const MSSpectrum &scan, const Int wavelet_length, const Int mz_index, const UInt charge) | IsotopeWaveletTransform< PeakType > | inlineprotected |
| scores_ | IsotopeWaveletTransform< PeakType > | protected |
| scoreThis_(const TransSpectrum &candidate, const UInt peak_cutoff, const double seed_mz, const UInt c, const double ampl_cutoff) | IsotopeWaveletTransform< PeakType > | protectedvirtual |
| scoreThis_(const MSSpectrum &candidate, const UInt peak_cutoff, const double seed_mz, const UInt c, const double ampl_cutoff) | IsotopeWaveletTransform< PeakType > | protectedvirtual |
| setSigma(const double sigma) | IsotopeWaveletTransform< PeakType > | inline |
| sigma_ | IsotopeWaveletTransform< PeakType > | protected |
| tmp_boxes_ | IsotopeWaveletTransform< PeakType > | protected |
| updateBoxStates(const PeakMap &map, const Size scan_index, const UInt RT_interleave, const UInt RT_votes_cutoff, const Int front_bound=-1, const Int end_bound=-1) | IsotopeWaveletTransform< PeakType > | |
| xs_ | IsotopeWaveletTransform< PeakType > | protected |
| zeros_ | IsotopeWaveletTransform< PeakType > | protected |
| ~IsotopeWaveletTransform() | IsotopeWaveletTransform< PeakType > | virtual |
1.9.1
