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OpenMS
2.7.0
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This is the complete list of members for MRMTransitionGroupPicker, including all inherited members.
| background_subtraction_ | MRMTransitionGroupPicker | protected |
| boundary_selection_method_ | MRMTransitionGroupPicker | protected |
| check_defaults_ | DefaultParamHandler | protected |
| compute_peak_quality_ | MRMTransitionGroupPicker | protected |
| compute_peak_shape_metrics_ | MRMTransitionGroupPicker | protected |
| compute_total_mi_ | MRMTransitionGroupPicker | protected |
| computeQuality_(const MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, const std::vector< SpectrumT > &picked_chroms, const int chr_idx, const double best_left, const double best_right, String &outlier) | MRMTransitionGroupPicker | inlineprotected |
| createMRMFeature(const MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, std::vector< SpectrumT > &picked_chroms, const std::vector< SpectrumT > &smoothed_chroms, const int chr_idx, const int peak_idx) | MRMTransitionGroupPicker | inline |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| error_name_ | DefaultParamHandler | protected |
| findLargestPeak(const std::vector< MSChromatogram > &picked_chroms, int &chr_idx, int &peak_idx) | MRMTransitionGroupPicker | |
| findWidestPeakIndices(const std::vector< MSChromatogram > &picked_chroms, Int &chrom_idx, Int &point_idx) const | MRMTransitionGroupPicker | |
| getDefaults() const | DefaultParamHandler | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| min_peak_width_ | MRMTransitionGroupPicker | protected |
| min_qual_ | MRMTransitionGroupPicker | protected |
| MRMTransitionGroupPicker() | MRMTransitionGroupPicker | |
| operator=(const MRMTransitionGroupPicker &rhs) | MRMTransitionGroupPicker | protected |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| peak_integration_ | MRMTransitionGroupPicker | protected |
| pi_ | MRMTransitionGroupPicker | protected |
| pickApex(std::vector< SpectrumT > &picked_chroms, const double best_left, const double best_right, const double peak_apex, double &min_left, double &max_right, std::vector< double > &left_edges, std::vector< double > &right_edges) | MRMTransitionGroupPicker | inline |
| picker_ | MRMTransitionGroupPicker | protected |
| pickFragmentChromatograms(const MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, const std::vector< SpectrumT > &picked_chroms, MRMFeature &mrmFeature, const std::vector< SpectrumT > &smoothed_chroms, const double best_left, const double best_right, const bool use_consensus_, double &total_intensity, double &total_xic, double &total_mi, double &total_peak_apices, const SpectrumT &master_peak_container, const std::vector< double > &left_edges, const std::vector< double > &right_edges, const int chr_idx, const int peak_idx) | MRMTransitionGroupPicker | inline |
| pickPrecursorChromatograms(const MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, const std::vector< SpectrumT > &picked_chroms, MRMFeature &mrmFeature, const std::vector< SpectrumT > &smoothed_chroms, const double best_left, const double best_right, const bool use_consensus_, double &total_intensity, const SpectrumT &master_peak_container, const std::vector< double > &left_edges, const std::vector< double > &right_edges, const int chr_idx, const int peak_idx) | MRMTransitionGroupPicker | inline |
| pickTransitionGroup(MRMTransitionGroup< SpectrumT, TransitionT > &transition_group) | MRMTransitionGroupPicker | inline |
| prepareMasterContainer_(const SpectrumT &ref_chromatogram, SpectrumT &master_peak_container, double left_boundary, double right_boundary) | MRMTransitionGroupPicker | inlineprotected |
| recalculate_peaks_ | MRMTransitionGroupPicker | protected |
| recalculate_peaks_max_z_ | MRMTransitionGroupPicker | protected |
| recalculatePeakBorders_(const std::vector< SpectrumT > &picked_chroms, double &best_left, double &best_right, double max_z) | MRMTransitionGroupPicker | inlineprotected |
| remove_overlapping_features(std::vector< SpectrumT > &picked_chroms, double best_left, double best_right) | MRMTransitionGroupPicker | inline |
| resample_boundary_ | MRMTransitionGroupPicker | protected |
| resampleChromatogram_(const SpectrumT &chromatogram, const SpectrumT &master_peak_container, double left_boundary, double right_boundary) | MRMTransitionGroupPicker | inlineprotected |
| selectChromHelper_(const MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, const String &native_id) | MRMTransitionGroupPicker | inlineprotected |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| stop_after_feature_ | MRMTransitionGroupPicker | protected |
| stop_after_intensity_ratio_ | MRMTransitionGroupPicker | protected |
| subsections_ | DefaultParamHandler | protected |
| updateMembers_() override | MRMTransitionGroupPicker | protectedvirtual |
| use_consensus_ | MRMTransitionGroupPicker | protected |
| use_precursors_ | MRMTransitionGroupPicker | protected |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="") | DefaultParamHandler | static |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~MRMTransitionGroupPicker() override | MRMTransitionGroupPicker |
1.9.1
