annotate_feature_(FeatureMapType &fm_out, Adduct &default_adduct, Compomer &c, const Size f_idx, const UInt side, const Int new_q, const Int old_q) | MetaboliteFeatureDeconvolution | protected |
candidateEdges_(FeatureMapType &fm_out, const Adduct &default_adduct, PairsType &feature_relation, Map< Size, std::set< CmpInfo_ > > &feature_adducts) | MetaboliteFeatureDeconvolution | protected |
CHARGEMODE enum name | MetaboliteFeatureDeconvolution | |
chargeTestworthy_(const Int feature_charge, const Int putative_charge, const bool other_unchanged) const | MetaboliteFeatureDeconvolution | protected |
check_defaults_ | DefaultParamHandler | protected |
checkSolution_(const ConsensusMap &cons_map) const | MetaboliteFeatureDeconvolution | protected |
ClusterPointType typedef | MetaboliteFeatureDeconvolution | |
compute(const FeatureMapType &fm_in, FeatureMapType &fm_out, ConsensusMap &cons_map, ConsensusMap &cons_map_p) | MetaboliteFeatureDeconvolution | |
CoordinateType typedef | MetaboliteFeatureDeconvolution | |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
DefaultParamHandler() | DefaultParamHandler | private |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
enable_intensity_filter_ | MetaboliteFeatureDeconvolution | protected |
error_name_ | DefaultParamHandler | protected |
FeatureMapType typedef | MetaboliteFeatureDeconvolution | |
FeatureType typedef | MetaboliteFeatureDeconvolution | |
getDefaults() const | DefaultParamHandler | |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getSubsections() const | DefaultParamHandler | |
inferMoreEdges_(PairsType &edges, Map< Size, std::set< CmpInfo_ > > &feature_adducts) | MetaboliteFeatureDeconvolution | protected |
intensityFilterPassed_(const Int q1, const Int q2, const Compomer &cmp, const FeatureType &f1, const FeatureType &f2) | MetaboliteFeatureDeconvolution | inlineprotected |
map_label_ | MetaboliteFeatureDeconvolution | protected |
map_label_inverse_ | MetaboliteFeatureDeconvolution | protected |
MetaboliteFeatureDeconvolution() | MetaboliteFeatureDeconvolution | |
MetaboliteFeatureDeconvolution(const MetaboliteFeatureDeconvolution &source) | MetaboliteFeatureDeconvolution | |
negative_mode_ | MetaboliteFeatureDeconvolution | protected |
operator=(const MetaboliteFeatureDeconvolution &source) | MetaboliteFeatureDeconvolution | |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
PairsType typedef | MetaboliteFeatureDeconvolution | |
param_ | DefaultParamHandler | protected |
potential_adducts_ | MetaboliteFeatureDeconvolution | protected |
printEdgesOfConnectedFeatures_(Size idx_1, Size idx_2, const PairsType &feature_relation) | MetaboliteFeatureDeconvolution | protected |
q_try_ | MetaboliteFeatureDeconvolution | protected |
QALL enum value | MetaboliteFeatureDeconvolution | |
QFROMFEATURE enum value | MetaboliteFeatureDeconvolution | |
QHEURISTIC enum value | MetaboliteFeatureDeconvolution | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
subsections_ | DefaultParamHandler | protected |
updateMembers_() override | MetaboliteFeatureDeconvolution | protectedvirtual |
verbose_level_ | MetaboliteFeatureDeconvolution | protected |
warn_empty_defaults_ | DefaultParamHandler | protected |
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="") | DefaultParamHandler | static |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~MetaboliteFeatureDeconvolution() override | MetaboliteFeatureDeconvolution | |