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OpenMS
2.7.0
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This is the complete list of members for PeakPickerCWT, including all inherited members.
| addPeak_(std::vector< PeakShape > &peaks_DC, PeakArea_ &area, double left_width, double right_width, OptimizePeakDeconvolution::Data &data) const | PeakPickerCWT | protected |
| check_defaults_ | DefaultParamHandler | protected |
| CMD enum value | ProgressLogger | |
| ConstPeakIterator typedef | PeakPickerCWT | |
| correlate_(const PeakShape &peak, const PeakArea_ &area, Int direction=0) const | PeakPickerCWT | protected |
| current_logger_ | ProgressLogger | mutableprotected |
| deconvolutePeak_(PeakShape &shape, std::vector< PeakShape > &peak_shapes, double peak_bound_cwt) const | PeakPickerCWT | protected |
| deconvolution_ | PeakPickerCWT | protected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| determineChargeState_(std::vector< double > &peak_values) const | PeakPickerCWT | protected |
| endProgress() const | ProgressLogger | |
| error_name_ | DefaultParamHandler | protected |
| estimatePeakWidth(const PeakMap &input) | PeakPickerCWT | |
| fitPeakShape_(const PeakArea_ &area) const | PeakPickerCWT | protected |
| fwhm_bound_ | PeakPickerCWT | protected |
| getDefaults() const | DefaultParamHandler | |
| getLogType() const | ProgressLogger | |
| getMaxPosition_(const PeakIterator first, const PeakIterator last, const ContinuousWaveletTransform &wt, PeakArea_ &area, const Int distance_from_scan_border, const double peak_bound_cwt, const double peak_bound_ms2_level_cwt, const Int direction=1) const | PeakPickerCWT | protected |
| getName() const | DefaultParamHandler | |
| getNumberOfPeaks_(ConstPeakIterator first, ConstPeakIterator last, std::vector< double > &peak_values, Int direction, double resolution, ContinuousWaveletTransformNumIntegration &wt, double peak_bound_cwt) const | PeakPickerCWT | protected |
| getParameters() const | DefaultParamHandler | |
| getPeakArea_(const PeakArea_ &area, double &area_left, double &area_right) const | PeakPickerCWT | protected |
| getPeakCentroid_(PeakArea_ &area) const | PeakPickerCWT | protected |
| getPeakEndPoints_(PeakIterator first, PeakIterator last, PeakArea_ &area, Int distance_from_scan_border, Int &peak_left_index, Int &peak_right_index, ContinuousWaveletTransformNumIntegration &wt) const | PeakPickerCWT | protected |
| getSubsections() const | DefaultParamHandler | |
| GUI enum value | ProgressLogger | |
| initializeWT_(ContinuousWaveletTransformNumIntegration &wt, const double peak_bound_in, double &peak_bound_ms_cwt) const | PeakPickerCWT | protected |
| last_invoke_ | ProgressLogger | mutableprotected |
| LogType enum name | ProgressLogger | |
| logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
| lorentz_(const double height, const double lambda, const double pos, const double x) const | PeakPickerCWT | inlineprotected |
| nextProgress() const | ProgressLogger | |
| noise_level_ | PeakPickerCWT | protected |
| NONE enum value | ProgressLogger | |
| OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger | |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| optimization_ | PeakPickerCWT | protected |
| param_ | DefaultParamHandler | protected |
| peak_bound_ | PeakPickerCWT | protected |
| peak_bound_ms2_level_ | PeakPickerCWT | protected |
| peak_corr_bound_ | PeakPickerCWT | protected |
| PeakIterator typedef | PeakPickerCWT | |
| PeakPickerCWT() | PeakPickerCWT | |
| pick(const MSSpectrum &input, MSSpectrum &output) const | PeakPickerCWT | |
| pickExperiment(const PeakMap &input, PeakMap &output) | PeakPickerCWT | |
| ProgressLogger() | ProgressLogger | |
| ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
| radius_ | PeakPickerCWT | protected |
| recursion_depth_ | ProgressLogger | protectedstatic |
| scale_ | PeakPickerCWT | protected |
| setLogType(LogType type) const | ProgressLogger | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setProgress(SignedSize value) const | ProgressLogger | |
| signal_to_noise_ | PeakPickerCWT | protected |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| subsections_ | DefaultParamHandler | protected |
| two_d_optimization_ | PeakPickerCWT | protected |
| type_ | ProgressLogger | mutableprotected |
| updateMembers_() override | PeakPickerCWT | protectedvirtual |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="") | DefaultParamHandler | static |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~PeakPickerCWT() override | PeakPickerCWT | |
| ~ProgressLogger() | ProgressLogger | virtual |
1.9.1
