OpenMS  2.7.0
ProteinResolver Member List

This is the complete list of members for ProteinResolver, including all inherited members.

binarySearchNodes_(String &seq, std::vector< PeptideEntry > &nodes, Size start, Size end)ProteinResolverprivate
buildingISDGroups_(std::vector< ProteinEntry > &protein_nodes, std::vector< PeptideEntry > &peptide_nodes, std::vector< ISDGroup > &isd_groups)ProteinResolverprivate
buildingMSDGroups_(std::vector< MSDGroup > &msd_groups, std::vector< ISDGroup > &isd_groups)ProteinResolverprivate
check_defaults_DefaultParamHandlerprotected
clearResult()ProteinResolver
computeIntensityOfMSD_(std::vector< MSDGroup > &msd_groups)ProteinResolverprivate
countTargetDecoy(std::vector< MSDGroup > &msd_groups, ConsensusMap &consensus)ProteinResolver
countTargetDecoy(std::vector< MSDGroup > &msd_groups, std::vector< PeptideIdentification > &peptide_nodes)ProteinResolver
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
findPeptideEntry_(String seq, std::vector< PeptideEntry > &nodes)ProteinResolverprivate
getDefaults() constDefaultParamHandler
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getPeptideHit(const ConsensusMap &consensus, const PeptideEntry *peptide)ProteinResolverstatic
getPeptideHit(const std::vector< PeptideIdentification > &peptide_nodes, const PeptideEntry *peptide)ProteinResolverstatic
getPeptideIdentification(const ConsensusMap &consensus, const PeptideEntry *peptide)ProteinResolverstatic
getPeptideIdentification(const std::vector< PeptideIdentification > &peptide_nodes, const PeptideEntry *peptide)ProteinResolverstatic
getResults()ProteinResolver
getSubsections() constDefaultParamHandler
includeMSMSPeptides_(std::vector< PeptideIdentification > &peptide_identifications, std::vector< PeptideEntry > &peptide_nodes)ProteinResolverprivate
includeMSMSPeptides_(ConsensusMap &consensus, std::vector< PeptideEntry > &peptide_nodes)ProteinResolverprivate
operator=(const ProteinResolver &rhs)ProteinResolver
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
primaryProteins_(std::vector< PeptideEntry > &peptide_nodes, std::vector< Size > &reindexed_peptides)ProteinResolverprivate
protein_data_ProteinResolverprivate
ProteinResolver()ProteinResolver
ProteinResolver(const ProteinResolver &rhs)ProteinResolver
reindexingNodes_(std::vector< MSDGroup > &msd_groups, std::vector< Size > &reindexed_proteins, std::vector< Size > &reindexed_peptides)ProteinResolverprivate
resolveConsensus(ConsensusMap &consensus)ProteinResolver
resolveID(std::vector< PeptideIdentification > &peptide_identifications)ProteinResolver
resolver_result_ProteinResolverprivate
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProteinData(std::vector< FASTAFile::FASTAEntry > &protein_data)ProteinResolver
subsections_DefaultParamHandlerprotected
traversePeptide_(PeptideEntry *pep_node, MSDGroup &group)ProteinResolverprivate
traverseProtein_(ProteinEntry *prot_node, MSDGroup &group)ProteinResolverprivate
updateMembers_()DefaultParamHandlerprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
~ProteinResolver() overrideProteinResolver