OpenMS  2.7.0
ProtonDistributionModel Member List

This is the complete list of members for ProtonDistributionModel, including all inherited members.

bb_charge_ProtonDistributionModelprotected
bb_charge_full_ProtonDistributionModelprotected
bb_charge_ion_c_term_ProtonDistributionModelprotected
bb_charge_ion_n_term_ProtonDistributionModelprotected
calcChargeStateIntensities_(const AASequence &peptide, const AASequence &n_term_ion, const AASequence &c_term_ion, Int charge, Residue::ResidueType n_term_type, std::vector< double > &n_term_intensities, std::vector< double > &c_term_intensities, FragmentationType type)ProtonDistributionModelprotected
calcChargeStateIntensities_(const AASequence &peptide, const AASequence &n_term_ion, const AASequence &c_term_ion, Int charge, Residue::ResidueType n_term_type, double &n_term1, double &c_term1, double &n_term2, double &c_term2, FragmentationType type)ProtonDistributionModelprotected
calculateProtonDistribution_(const AASequence &peptide, Int charge, Residue::ResidueType res_type=Residue::YIon, bool fixed_proton=false, Size cleavage_site=0, bool use_most_basic_site=false)ProtonDistributionModelprotected
calculateProtonDistributionCharge1_(const AASequence &peptide, Residue::ResidueType res_type)ProtonDistributionModelprotected
calculateProtonDistributionCharge2_(const AASequence &peptide, Residue::ResidueType res_type, bool fixed_proton, Size cleavage_site, bool use_most_basic_site)ProtonDistributionModelprotected
calculateProtonDistributionGreater2_(const AASequence &peptide, Int charge, Residue::ResidueType res_type)ProtonDistributionModelprotected
calculateProtonDistributionIonPair_(const AASequence &peptide, Residue::ResidueType type, Size cleavage_site)ProtonDistributionModelprotected
ChargeDirected enum valueProtonDistributionModel
ChargeRemote enum valueProtonDistributionModel
check_defaults_DefaultParamHandlerprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
E_ProtonDistributionModelprotected
E_c_term_ProtonDistributionModelprotected
E_n_term_ProtonDistributionModelprotected
error_name_DefaultParamHandlerprotected
FragmentationType enum nameProtonDistributionModel
getChargeStateIntensities(const AASequence &peptide, const AASequence &n_term_ion, const AASequence &c_term_ion, Int charge, Residue::ResidueType n_term_type, std::vector< double > &n_term_intensities, std::vector< double > &c_term_intensities, FragmentationType type)ProtonDistributionModel
getDefaults() constDefaultParamHandler
getLeftAndRightGBValues_(const AASequence &peptide, double &left_gb, double &right_gb, Size position)ProtonDistributionModelprotected
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getProtonDistribution(std::vector< double > &bb_charges, std::vector< double > &sc_charges, const AASequence &peptide, Int charge, Residue::ResidueType res_type=Residue::YIon)ProtonDistributionModel
getSubsections() constDefaultParamHandler
operator=(const ProtonDistributionModel &pdm)ProtonDistributionModel
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
ProtonDistributionModel()ProtonDistributionModel
ProtonDistributionModel(const ProtonDistributionModel &model)ProtonDistributionModel
sc_charge_ProtonDistributionModelprotected
sc_charge_full_ProtonDistributionModelprotected
sc_charge_ion_c_term_ProtonDistributionModelprotected
sc_charge_ion_n_term_ProtonDistributionModelprotected
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setPeptideProtonDistribution(const std::vector< double > &bb_charge, const std::vector< double > &sc_charge)ProtonDistributionModel
SideChain enum valueProtonDistributionModel
subsections_DefaultParamHandlerprotected
updateMembers_()DefaultParamHandlerprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
~ProtonDistributionModel() overrideProtonDistributionModel