QTClusterFinder Member List

This is the complete list of members for QTClusterFinder, including all inherited members.

addClusterElements_(const Grid &grid, QTCluster &cluster)	QTClusterFinder	private
already_used_	QTClusterFinder	private
BaseGroupFinder()	BaseGroupFinder
BaseGroupFinder(const BaseGroupFinder &)	BaseGroupFinder	private
bin_tolerances_	QTClusterFinder	private
check_defaults_	DefaultParamHandler	protected
checkIds_(const std::vector< ConsensusMap > &maps) const	BaseGroupFinder	protected
CMD enum value	ProgressLogger
computeClustering_(const Grid &grid, Heap &cluster_heads, std::vector< QTCluster::BulkData > &cluster_data, std::vector< Heap::handle_type > &handles, ElementMapping &element_mapping)	QTClusterFinder	private
create()	QTClusterFinder	inlinestatic
createConsensusFeature_(ConsensusFeature &feature, const double quality, const QTCluster::Elements &elements)	QTClusterFinder	private
current_logger_	ProgressLogger	mutableprotected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
distIsOutlier_(double dist, double rt)	QTClusterFinder	private
ElementMapping typedef	QTClusterFinder
endProgress() const	ProgressLogger
error_name_	DefaultParamHandler	protected
feature_distance_	QTClusterFinder	private
getDefaults() const	DefaultParamHandler
getDistance_(const OpenMS::GridFeature *left, const OpenMS::GridFeature *right)	QTClusterFinder	private
getLogType() const	ProgressLogger
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getProductName()	QTClusterFinder	inlinestatic
getSubsections() const	DefaultParamHandler
Grid typedef	QTClusterFinder
GUI enum value	ProgressLogger
Heap typedef	QTClusterFinder
last_invoke_	ProgressLogger	mutableprotected
LogType enum name	ProgressLogger
logTypeToFactoryName_(LogType type)	ProgressLogger	protectedstatic
makeConsensusFeature_(Heap &cluster_heads, ConsensusFeature &feature, ElementMapping &element_mapping, const Grid &grid, const std::vector< Heap::handle_type > &handles)	QTClusterFinder	private
max_diff_mz_	QTClusterFinder	private
max_diff_rt_	QTClusterFinder	private
min_nr_diffs_per_bin_	QTClusterFinder	private
min_score_	QTClusterFinder	private
MZ enum value	QTClusterFinder	protected
nextProgress() const	ProgressLogger
noID_penalty_	QTClusterFinder	private
NONE enum value	ProgressLogger
nr_partitions_	QTClusterFinder	private
num_maps_	QTClusterFinder	private
operator=(const BaseGroupFinder &)	BaseGroupFinder	private
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)	ProgressLogger
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
PairDistances typedef	QTClusterFinder
param_	DefaultParamHandler	protected
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
QTClusterFinder()	QTClusterFinder
recursion_depth_	ProgressLogger	protectedstatic
registerChildren()	BaseGroupFinder	static
removeFromElementMapping_(const QTCluster &cluster, ElementMapping &element_mapping)	QTClusterFinder	private
RT enum value	QTClusterFinder	protected
run(const std::vector< ConsensusMap > &input_maps, ConsensusMap &result_map) override	QTClusterFinder	virtual
run(const std::vector< FeatureMap > &input_maps, ConsensusMap &result_map)	QTClusterFinder
run_(const std::vector< MapType > &input_maps, ConsensusMap &result_map)	QTClusterFinder	private
run_internal_(const std::vector< MapType > &input_maps, ConsensusMap &result_map, bool do_progress)	QTClusterFinder	private
setLogType(LogType type) const	ProgressLogger
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setParameters_(double max_intensity, double max_mz)	QTClusterFinder	private
setProgress(SignedSize value) const	ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
subsections_	DefaultParamHandler	protected
type_	ProgressLogger	mutableprotected
updateClustering_(ElementMapping &element_mapping, const Grid &grid, const QTCluster::Elements &elements, Heap &cluster_heads, const std::vector< Heap::handle_type > &handles, Size best_id)	QTClusterFinder	private
updateMembers_()	DefaultParamHandler	protectedvirtual
use_IDs_	QTClusterFinder	private
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="")	DefaultParamHandler	static
~BaseGroupFinder() override	BaseGroupFinder
~DefaultParamHandler()	DefaultParamHandler	virtual
~ProgressLogger()	ProgressLogger	virtual
~QTClusterFinder() override	QTClusterFinder