SiriusAdapterAlgorithm Member List

This is the complete list of members for SiriusAdapterAlgorithm, including all inherited members.

callSiriusQProcess(const String &tmp_ms_file, const String &tmp_out_dir, String &executable, const String &out_csifingerid, const bool decoy_generation) const	SiriusAdapterAlgorithm
check_defaults_	DefaultParamHandler	protected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
determineSiriusExecutable(String &executable)	SiriusAdapterAlgorithm	static
error_name_	DefaultParamHandler	protected
fingerid	SiriusAdapterAlgorithm	private
getDefaults() const	DefaultParamHandler
getFilterByNumMassTraces() const	SiriusAdapterAlgorithm	inline
getIsotopePatternIterations() const	SiriusAdapterAlgorithm	inline
getName() const	DefaultParamHandler
getNumberOfCSIFingerIDCandidates() const	SiriusAdapterAlgorithm	inline
getNumberOfSiriusCandidates() const	SiriusAdapterAlgorithm	inline
getParameters() const	DefaultParamHandler
getPrecursorMzTolerance() const	SiriusAdapterAlgorithm	inline
getPrecursorRtTolerance() const	SiriusAdapterAlgorithm	inline
getSubsections() const	DefaultParamHandler
hasFullNameParameter(const String &name) const	SiriusAdapterAlgorithm
isFeatureOnly() const	SiriusAdapterAlgorithm	inline
isNoMasstraceInfoIsotopePattern() const	SiriusAdapterAlgorithm	inline
logFeatureSpectraNumber(const String &featureinfo, const FeatureMapping::FeatureToMs2Indices &feature_mapping, const MSExperiment &spectra)	SiriusAdapterAlgorithm
operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
passatutto	SiriusAdapterAlgorithm	private
precursorMzToleranceUnitIsPPM() const	SiriusAdapterAlgorithm	inline
preprocessing	SiriusAdapterAlgorithm	private
preprocessingSirius(const String &featureinfo, const MSExperiment &spectra, FeatureMapping::FeatureMappingInfo &fm_info, FeatureMapping::FeatureToMs2Indices &feature_mapping)	SiriusAdapterAlgorithm
project	SiriusAdapterAlgorithm	private
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
sirius	SiriusAdapterAlgorithm	private
SiriusAdapterAlgorithm()	SiriusAdapterAlgorithm
SiriusSubtool typedef	SiriusAdapterAlgorithm	private
sortSiriusWorkspacePathsByScanIndex(std::vector< String > &subdirs)	SiriusAdapterAlgorithm	static
subsections_	DefaultParamHandler	protected
updateExistingParameter(const Param &param)	SiriusAdapterAlgorithm
updateMembers_()	DefaultParamHandler	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual