OpenMS  2.7.0
TwoDOptimization Member List

This is the complete list of members for TwoDOptimization, including all inherited members.

check_defaults_DefaultParamHandlerprotected
curr_region_TwoDOptimizationprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
findMatchingPeaks_(std::multimap< double, IsotopeCluster >::iterator &it, PeakMap &ms_exp)TwoDOptimizationprotected
getDefaults() constDefaultParamHandler
getMaxIterations() constTwoDOptimizationinline
getMaxPeakDistance() constTwoDOptimizationinline
getMZTolerance() constTwoDOptimizationinline
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getPenalties() constTwoDOptimizationinline
getRegionEndpoints_(PeakMap &exp, InputSpectrumIterator &first, InputSpectrumIterator &last, Size iso_map_idx, double noise_level, TwoDOptimization::Data &d)TwoDOptimizationprotected
getSubsections() constDefaultParamHandler
iso_map_TwoDOptimizationprotected
matching_peaks_TwoDOptimizationprotected
max_iteration_TwoDOptimizationprotected
max_peak_distance_TwoDOptimizationprotected
operator=(const TwoDOptimization &opt)TwoDOptimization
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
optimize(InputSpectrumIterator first, InputSpectrumIterator last, PeakMap &ms_exp, bool real2D=true)TwoDOptimization
optimizeRegions_(InputSpectrumIterator &first, InputSpectrumIterator &last, PeakMap &ms_exp)TwoDOptimizationprotected
optimizeRegionsScanwise_(InputSpectrumIterator &first, InputSpectrumIterator &last, PeakMap &ms_exp)TwoDOptimizationprotected
param_DefaultParamHandlerprotected
penalties_TwoDOptimizationprotected
real_2D_TwoDOptimizationprotected
searchInScan_(std::vector< double >::iterator scan_begin, std::vector< double >::iterator scan_end, double current_mz)TwoDOptimizationprotected
setMaxIterations(UInt max_iteration)TwoDOptimizationinline
setMaxPeakDistance(double max_peak_distance)TwoDOptimizationinline
setMZTolerance(double tolerance_mz)TwoDOptimizationinline
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setPenalties(OptimizationFunctions::PenaltyFactorsIntensity &penalties)TwoDOptimizationinline
subsections_DefaultParamHandlerprotected
tolerance_mz_TwoDOptimizationprotected
TwoDOptimization()TwoDOptimization
TwoDOptimization(const TwoDOptimization &opt)TwoDOptimization
updateMembers_() overrideTwoDOptimizationprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
~TwoDOptimization() overrideTwoDOptimizationinline