ConstRefVector.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2021.
//
// This software is released under a three-clause BSD license:
//  * Redistributions of source code must retain the above copyright
//    notice, this list of conditions and the following disclaimer.
//  * Redistributions in binary form must reproduce the above copyright
//    notice, this list of conditions and the following disclaimer in the
//    documentation and/or other materials provided with the distribution.
//  * Neither the name of any author or any participating institution
//    may be used to endorse or promote products derived from this software
//    without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/CONCEPT/Types.h>
 
#include <algorithm>
#include <typeinfo>
#include <vector>
 
namespace OpenMS
{
 
  template <typename ContainerT>
  class ConstRefVector
  {
public:
 
    template <class ValueT>
    class ConstRefVectorConstIterator
    {
      friend class ConstRefVector;
 
public:
      typedef ValueT ValueType;
      typedef ValueType value_type;
      typedef typename std::vector<ValueType*>::difference_type difference_type;
      typedef const value_type& reference;
      typedef const value_type* pointer;
      typedef std::random_access_iterator_tag iterator_category;
 
      ConstRefVectorConstIterator() = default;
 
      ConstRefVectorConstIterator(const ConstRefVectorConstIterator&) = default;
 
      ConstRefVectorConstIterator& operator=(const ConstRefVectorConstIterator&) = default;
 
      ~ConstRefVectorConstIterator() = default;
 
      ConstRefVectorConstIterator(const typename std::vector<ValueType*>* vec, unsigned int position)
      {
        vector_ = (typename std::vector<ValueType*>*)vec;
        position_ = position;
      }
 
      ConstRefVectorConstIterator(typename std::vector<ValueType*>* vec, unsigned int position)
      {
        vector_ = vec;
        position_ = position;
      }
 
      bool operator<(const ConstRefVectorConstIterator& it) const
      {
        return position_ < it.position_;
      }
 
      bool operator>(const ConstRefVectorConstIterator& it) const
      {
        return position_ > it.position_;
      }
 
      bool operator<=(const ConstRefVectorConstIterator& it) const
      {
        return position_ < it.position_ || position_ == it.position_;
      }
 
      bool operator>=(const ConstRefVectorConstIterator& it) const
      {
        return position_ > it.position_ || position_ == it.position_;
      }
 
      bool operator==(const ConstRefVectorConstIterator& it) const
      {
        return position_ == it.position_ && vector_ == it.vector_;
      }
 
      bool operator!=(const ConstRefVectorConstIterator& it) const
      {
        return position_ != it.position_ || vector_ != it.vector_;
      }
 
      ConstRefVectorConstIterator& operator++()
      {
        position_ += 1;
        return *this;
      }
 
      ConstRefVectorConstIterator operator++(int)
      {
        ConstRefVectorConstIterator tmp(*this);
        ++(*this);
        return tmp;
      }
 
      ConstRefVectorConstIterator& operator--()
      {
        position_ -= 1;
        return *this;
      }
 
      ConstRefVectorConstIterator operator--(int)
      {
        ConstRefVectorConstIterator tmp(*this);
        --(*this);
        return tmp;
      }
 
      ConstRefVectorConstIterator operator-(difference_type n) const
      {
        ConstRefVectorConstIterator tmp(*this);
        tmp.position_ -= n;
        return tmp;
      }
 
      ConstRefVectorConstIterator operator+(difference_type n) const
      {
        ConstRefVectorConstIterator tmp(*this);
        tmp.position_ += n;
        return tmp;
      }
 
      ConstRefVectorConstIterator& operator+=(difference_type n)
      {
        position_ += n;
        return *this;
      }
 
      ConstRefVectorConstIterator& operator-=(difference_type n)
      {
        position_ -= n;
        return *this;
      }
 
      friend difference_type operator-(const ConstRefVectorConstIterator& i1, const ConstRefVectorConstIterator& i2)
      {
        return i1.position_ - i2.position_;
      }
 
      friend ConstRefVectorConstIterator operator+(difference_type n, const ConstRefVectorConstIterator& i)
      {
        ConstRefVectorConstIterator tmp(i);
        tmp.position_ += n;
        return tmp;
      }
 
      reference operator*() const
      {
        return *((*vector_)[position_]);
      }
 
      pointer operator->() const
      {
        return (*vector_)[position_];
      }
 
protected:
 
      typename std::vector<ValueType*>* vector_;
      unsigned int position_;
    };
 
 
    template <class ValueT>
    class ConstRefVectorIterator :
      public ConstRefVectorConstIterator<ValueT>
    {
      friend class ConstRefVector;
 
public:
 
      typedef ValueT ValueType;
      typedef typename ConstRefVectorConstIterator<ValueType>::value_type& reference;
      typedef typename ConstRefVectorConstIterator<ValueType>::value_type* pointer;
 
      using ConstRefVectorConstIterator<ValueType>::vector_;
      using ConstRefVectorConstIterator<ValueType>::position_;
 
      ConstRefVectorIterator() = default;
 
      ConstRefVectorIterator(const ConstRefVectorIterator&) = default;
      
      ConstRefVectorIterator(typename std::vector<ValueType*>* vec, unsigned int position) :
        ConstRefVectorConstIterator<ValueType>(vec, position)
      {
      }
 
      ~ConstRefVectorIterator() = default;
 
      ConstRefVectorIterator& operator=(const ConstRefVectorIterator& rhs) = default;
 
      reference operator*() const
      {
        return *((*vector_)[position_]);
      }
 
      pointer operator->() const
      {
        return (*vector_)[position_];
      }
 
      ConstRefVectorIterator& operator++()
      {
        ConstRefVectorConstIterator<ValueType>::position_ += 1;
        return *this;
      }
 
      ConstRefVectorIterator operator++(int)
      {
        ConstRefVectorIterator tmp(*this);
        ++(*this);
        return tmp;
      }
 
      ConstRefVectorIterator& operator--()
      {
        ConstRefVectorConstIterator<ValueType>::position_ -= 1;
        return *this;
      }
 
      ConstRefVectorIterator operator--(int)
      {
        ConstRefVectorIterator tmp(*this);
        --(*this);
        return tmp;
      }
 
      ConstRefVectorIterator operator-(typename ConstRefVectorIterator::difference_type n) const
      {
        ConstRefVectorIterator tmp(*this);
        tmp.position_ -= n;
        return tmp;
      }
 
      ConstRefVectorIterator operator+(typename ConstRefVectorIterator::difference_type n) const
      {
        ConstRefVectorIterator tmp(*this);
        tmp.position_ += n;
        return tmp;
      }
 
      friend ConstRefVectorIterator operator+(typename ConstRefVectorIterator::difference_type n, const ConstRefVectorIterator& i)
      {
        ConstRefVectorIterator tmp(i);
        tmp.position_ += n;
        return tmp;
      }
 
      ConstRefVectorIterator& operator+=(typename ConstRefVectorIterator::difference_type n)
      {
        ConstRefVectorConstIterator<ValueType>::position_ += n;
        return *this;
      }
 
      ConstRefVectorIterator& operator-=(typename ConstRefVectorIterator::difference_type n)
      {
        ConstRefVectorConstIterator<ValueType>::position_ -= n;
        return *this;
      }
 
      friend void swap(ConstRefVectorIterator& i1, ConstRefVectorIterator& i2)
      {
        unsigned int tmp = i1.position_;
        i1.position_ = i2.position_;
        i2.position_ = tmp;
      }
 
    };
 
 
 
    typedef ContainerT ContainerType;
    typedef typename ContainerType::value_type ValueType;
    typedef ConstRefVectorIterator<const ValueType> Iterator;
    typedef ConstRefVectorConstIterator<const ValueType> ConstIterator;
    typedef std::reverse_iterator<Iterator> ReverseIterator;
    typedef std::reverse_iterator<ConstIterator> ConstReverseIterator;
 
 
    typedef ValueType value_type;
    typedef typename ContainerType::size_type size_type;
    typedef typename ContainerType::difference_type difference_type;
    typedef typename ContainerType::reference reference;
    typedef typename ContainerType::const_reference const_reference;
    typedef typename ContainerType::pointer pointer;
    typedef Iterator iterator;
    typedef ConstIterator const_iterator;
    typedef ReverseIterator reverse_iterator;
    typedef ConstReverseIterator const_reverse_iterator;
 
 
    void push_back(const ValueType& x)
    {
      const ValueType* element = &x;
      vector_.push_back(element);
    }
 
    void pop_back()
    {
      vector_.pop_back();
    }
 
    size_type size() const
    {
      return vector_.size();
    }
 
    size_type capacity() const
    {
      return std::max(vector_.size(), capacity_);
    }
 
    void reserve(size_type n)
    {
      size_type cap = capacity();
 
      if (n > cap)
      {
        vector_.reserve(n);
        capacity_ = n;
      }
    }
 
    size_type max_size() const
    {
      return vector_.max_size();
    }
 
    Iterator begin()
    {
      return Iterator((std::vector<const ValueType*>*) & vector_, (unsigned int)0);
    }
 
    Iterator end()
    {
      return Iterator((std::vector<const ValueType*>*) & vector_, (unsigned int)(vector_.size()));
    }
 
    ConstIterator begin() const
    {
      return ConstIterator((const std::vector<const ValueType*>*) & vector_, (unsigned int)0);
    }
 
    ConstIterator end() const
    {
      return ConstIterator((const std::vector<const ValueType*>*) & vector_, (unsigned int)(vector_.size()));
    }
 
    ReverseIterator rbegin()
    {
      return ReverseIterator(end());
    }
 
    ReverseIterator rend()
    {
      return ReverseIterator(begin());
    }
 
    ConstReverseIterator rbegin() const
    {
      return ConstReverseIterator(end());
    }
 
    ConstReverseIterator rend() const
    {
      return ConstReverseIterator(begin());
    }
 
    void resize(size_type new_size)
    {
      vector_.resize(new_size);
      capacity_ = vector_.capacity();
    }
 
    void resize(size_type new_size, const ValueType& t)
    {
      vector_.resize(new_size, &t);
      capacity_ = vector_.capacity();
    }
 
    const_reference front() const
    {
      return *(begin());
    }
 
    const_reference back() const
    {
      return *(end() - 1);
    }
 
    void clear()
    {
      vector_.clear();
    }
 
    bool empty() const
    {
      return vector_.empty();
    }
 
    const_reference operator[](size_type n) const
    {
      return *(vector_[n]);
    }
 
    bool operator==(const ConstRefVector& array) const
    {
      if (base_container_ptr_ != array.base_container_ptr_)
      {
        return false;
      }
      if (size() != array.size())
      {
        return false;
      }
      for (Size i = 0; i < size(); i++)
      {
        if (typeid(*(vector_[i])) != typeid(*(array.vector_[i])))
        {
          return false;
        }
        if (vector_[i]->operator!=(* array.vector_[i]))
        {
          return false;
        }
      }
      return true;
    }
 
    bool operator!=(const ConstRefVector& array) const
    {
      return !(operator==(array));
    }
 
    bool operator<(const ConstRefVector& array) const
    {
      return size() < array.size();
    }
 
    bool operator>(const ConstRefVector& array) const
    {
      return size() > array.size();
    }
 
    bool operator<=(const ConstRefVector& array) const
    {
      return operator<(array) || operator==(array);
    }
 
    bool operator>=(const ConstRefVector& array) const
    {
      return operator>(array) || operator==(array);
    }
 
    void swap(ConstRefVector& array)
    {
      vector_.swap(array.vector_);
    }
 
    friend void swap(ConstRefVector& a1, ConstRefVector& a2)
    {
      a1.vector_.swap(a2.vector_);
    }
 
    Iterator insert(Iterator pos, const ValueType& element)
    {
      const ValueType* pointer = &element;
      vector_.insert(vector_.begin() + pos.position_, pointer);
      return pos;
    }
 
    void insert(Iterator pos, size_type n, const ValueType& element)
    {
      const ValueType* pointer;
      std::vector<const ValueType*> tmp;
      for (size_type i = 0; i < n; i++)
      {
        pointer = &element;
        tmp.push_back(pointer);
      }
      vector_.insert(vector_.begin() + pos.position_, tmp.begin(), tmp.end());
    }
 
    template <class InputIterator>
    void insert(Iterator pos, InputIterator f, InputIterator l)
    {
      const ValueType* pointer;
      std::vector<const ValueType*> tmp;
      for (InputIterator it = f; it != l; ++it)
      {
        pointer = &(*it);
        tmp.push_back(pointer);
      }
      vector_.insert(vector_.begin() + pos.position_, tmp.begin(), tmp.end());
    }
 
    Iterator erase(Iterator pos)
    {
      vector_.erase(vector_.begin() + pos.position_);
      return pos;
    }
 
    Iterator erase(Iterator first, Iterator last)
    {
      vector_.erase(vector_.begin() + first.position_, vector_.begin() + last.position_);
      return first;
    }
 
 
    ConstRefVector() :
      capacity_(0),
      base_container_ptr_(nullptr)
    {
    }
 
    ConstRefVector(size_type n) :
      capacity_(0),
      base_container_ptr_(0)
    {
      vector_ = std::vector<const ValueType*>(n);
    }
 
    ConstRefVector(size_type n, const ValueType& element) :
      capacity_(0),
      base_container_ptr_(0)
    {
      vector_ = std::vector<const ValueType*>(n, &element);
    }
 
    ConstRefVector(const ConstRefVector& p) :
      capacity_(0),
      base_container_ptr_(p.base_container_ptr_)
    {
      const ValueType* element;
      for (ConstIterator it = p.begin(); it != p.end(); ++it)
      {
        element = &(*it);
        vector_.push_back(element);
      }
    }
 
    template <class InputIterator>
    ConstRefVector(InputIterator f, InputIterator l) :
      capacity_(0),
      base_container_ptr_(nullptr)
    {
      const ValueType* pointer;
      for (InputIterator it = f; it != l; ++it)
      {
        pointer = &(*it);
        vector_.push_back(pointer);
      }
    }
 
    ConstRefVector(ContainerType& p) :
      capacity_(0),
      base_container_ptr_(&p)
    {
      const ValueType* element;
      for (typename ContainerType::iterator it = p.begin(); it != p.end(); ++it)
      {
        element = &(*it);
        vector_.push_back(element);
      }
    }
 
    ~ConstRefVector()
    {
    }
 
 
    ConstRefVector& operator=(const ConstRefVector& rhs)
    {
      if (this == &rhs) return *this;
 
      base_container_ptr_ = rhs.base_container_ptr_;
      clear();
      reserve(rhs.size());
      const ValueType* element;
      for (ConstIterator it = rhs.begin(); it != rhs.end(); ++it)
      {
        element = &(*it);
        vector_.push_back(element);
      }
 
      return *this;
    }
 
    template <class InputIterator>
    void assign(InputIterator f, InputIterator l)
    {
      clear();
      insert(end(), f, l);
    }
 
    void assign(size_type n, const ValueType& x)
    {
      clear();
      insert(end(), n, x);
    }
 
 
    void sortByIntensity(bool reverse = false)
    {
      if (reverse)
      {
        auto pointerCmp = [](auto& left, auto& right){typename ValueType::IntensityLess cmp; return cmp(*left, *right);};
        std::sort(vector_.begin(), vector_.end(), [&](auto &left, auto &right) {return pointerCmp(right, left);});
      }
      else
      {
        std::sort(vector_.begin(), vector_.end(), [](auto& left, auto& right){typename ValueType::IntensityLess cmp; return cmp(*left, *right);}); 
      }
    }
 
    void sortByPosition()
    {
      std::sort(vector_.begin(), vector_.end(), [](auto& left, auto& right){typename ValueType::PositionLess cmp; return cmp(*left, *right);}); 
    }
 
 
    template <typename ComparatorType>
    void sortByComparator(ComparatorType const& comparator = ComparatorType())
    {
      std::sort(vector_.begin(), vector_.end(), [&](auto& left, auto& right){return comparator(*left, *right);});
    }
 
 
    //----------------------------------------------------------------------
 
protected:
 
    std::vector<const ValueType*> vector_;
    size_type capacity_;
    const ContainerType* base_container_ptr_;
  };
 
} // namespace OpenMS