OpenMS  2.8.0
FeatureXMLFile.h
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31 // $Maintainer: Chris Bielow $
32 // $Authors: Marc Sturm, Chris Bielow, Clemens Groepl $
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34 
35 #pragma once
36 
38 #include <OpenMS/FORMAT/XMLFile.h>
40 
41 #include <iosfwd>
42 
43 namespace OpenMS
44 {
45  class Feature;
46  class FeatureMap;
47 
62  class OPENMS_DLLAPI FeatureXMLFile :
63  public Internal::XMLFile,
64  public ProgressLogger
65  {
66 
67 public:
68 
74  ~FeatureXMLFile() override;
76 
83  void load(const String& filename, FeatureMap& feature_map);
84 
85  Size loadSize(const String& filename);
86 
92  void store(const String& filename, const FeatureMap& feature_map);
93 
96 
99 
102 
103 protected:
104 
107 
108  };
109 
110 } // namespace OpenMS
111 
Options for loading files containing features.
Definition: FeatureFileOptions.h:47
A container for features.
Definition: FeatureMap.h:106
This class provides Input/Output functionality for feature maps.
Definition: FeatureXMLFile.h:65
FeatureXMLFile()
Default constructor.
const FeatureFileOptions & getOptions() const
Non-mutable access to the options for loading/storing.
void load(const String &filename, FeatureMap &feature_map)
loads the file with name filename into map and calls updateRanges().
void store(const String &filename, const FeatureMap &feature_map)
stores the map feature_map in file with name filename.
~FeatureXMLFile() override
Destructor.
FeatureFileOptions options_
Options that can be set.
Definition: FeatureXMLFile.h:106
Size loadSize(const String &filename)
FeatureFileOptions & getOptions()
Mutable access to the options for loading/storing.
void setOptions(const FeatureFileOptions &)
setter for options for loading/storing
Base class for loading/storing XML files that have a handler derived from XMLHandler.
Definition: XMLFile.h:49
Base class for all classes that want to report their progress.
Definition: ProgressLogger.h:53
A more convenient string class.
Definition: String.h:60
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47