OpenMS  2.8.0
Fitter1D.h
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34 
35 #pragma once
36 
39 #include <OpenMS/KERNEL/Feature.h>
40 #include <OpenMS/KERNEL/Peak1D.h>
43 #include <memory>
44 
45 namespace OpenMS
46 {
47  class InterpolationModel;
48 
59  class OPENMS_DLLAPI Fitter1D :
60  public DefaultParamHandler,
61  public FeatureFinderDefs
62  {
63 public:
64 
74  typedef Peak1D PeakType;
76  typedef std::vector<PeakType> RawDataArrayType;
78  typedef RawDataArrayType::iterator PeakIterator;
79 
82 
84  Fitter1D(const Fitter1D& source);
85 
87  ~Fitter1D() override;
88 
90  virtual Fitter1D& operator=(const Fitter1D& source);
91 
93  virtual QualityType fit1d(const RawDataArrayType& /* range */, std::unique_ptr<InterpolationModel>& /* model */);
94 
96  static void registerChildren();
97 
98 protected:
99 
106 
107  void updateMembers_() override;
108 
109  };
110 
111 }
112 
float QualityType
Definition: BaseFeature.h:64
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:93
Abstract base class for all 1D-dimensional model fitter.
Definition: Fitter1D.h:62
RawDataArrayType::iterator PeakIterator
Peak type data iterator.
Definition: Fitter1D.h:78
std::vector< PeakType > RawDataArrayType
Peak type data container type using for the temporary storage of the input data.
Definition: Fitter1D.h:76
Fitter1D()
Default constructor.
Fitter1D(const Fitter1D &source)
copy constructor
~Fitter1D() override
destructor
Feature::QualityType QualityType
Quality of a feature.
Definition: Fitter1D.h:72
CoordinateType tolerance_stdev_box_
standard derivation in bounding box
Definition: Fitter1D.h:101
virtual QualityType fit1d(const RawDataArrayType &, std::unique_ptr< InterpolationModel > &)
return interpolation model
Feature::CoordinateType CoordinateType
Single coordinate.
Definition: Fitter1D.h:70
static void registerChildren()
register all derived classes here
virtual Fitter1D & operator=(const Fitter1D &source)
assignment operator
CoordinateType interpolation_step_
interpolation step size
Definition: Fitter1D.h:105
void updateMembers_() override
This method is used to update extra member variables at the end of the setParameters() method.
Peak1D PeakType
Peak type data point type.
Definition: Fitter1D.h:74
Math::BasicStatistics statistics_
basic statistics
Definition: Fitter1D.h:103
IsotopeCluster::ChargedIndexSet ChargedIndexSet
IndexSet with charge information.
Definition: Fitter1D.h:68
IsotopeCluster::IndexSet IndexSet
IndexSet.
Definition: Fitter1D.h:66
Calculates some basic statistical parameters of a distribution: sum, mean, variance,...
Definition: BasicStatistics.h:69
A 1-dimensional raw data point or peak.
Definition: Peak1D.h:54
double CoordinateType
Coordinate type (of the position)
Definition: Peak2D.h:64
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
The purpose of this struct is to provide definitions of classes and typedefs which are used throughou...
Definition: FeatureFinderDefs.h:51
index set with associated charge estimate
Definition: IsotopeCluster.h:54
std::set< IndexPair > IndexSet
A set of index pairs, usually referring to an MSExperiment.
Definition: IsotopeCluster.h:49