OpenMS  2.8.0
ILPDCWrapper.h
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31 // $Maintainer: Chris Bielow $
32 // $Authors: Chris Bielow $
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34 
35 #pragma once
36 
37 
40 
41 #include <vector>
42 #include <set>
43 
44 namespace OpenMS
45 {
46 
47  class MassExplainer;
48  class FeatureMap;
49  class ChargePair;
50 
51  class OPENMS_DLLAPI ILPDCWrapper
52  {
53 
54 public:
55  typedef std::vector<ChargePair> PairsType;
56  typedef PairsType::size_type PairsIndex;
57 
60 
62  virtual ~ILPDCWrapper();
63 
68  double compute(const FeatureMap fm, PairsType& pairs, Size verbose_level) const;
69 
70 private:
71 
73  double computeSlice_(const FeatureMap fm,
74  PairsType& pairs,
75  const PairsIndex margin_left,
76  const PairsIndex margin_right,
77  const Size verbose_level) const;
78 
80  double computeSliceOld_(const FeatureMap fm,
81  PairsType& pairs,
82  const PairsIndex margin_left,
83  const PairsIndex margin_right,
84  const Size verbose_level) const;
85 
87  double getLogScore_(const PairsType::value_type& pair, const FeatureMap& fm) const;
88 
90 
91  // add another charge annotation variant for a feature
92  void updateFeatureVariant_(FeatureType_& f_set, const String& rota_l, const Size& v) const;
93 
94 
95 
96  }; // !class
97 
98 } // !namespace
99 
A container for features.
Definition: FeatureMap.h:106
Definition: ILPDCWrapper.h:52
std::vector< ChargePair > PairsType
Definition: ILPDCWrapper.h:55
double getLogScore_(const PairsType::value_type &pair, const FeatureMap &fm) const
calculate a score for the i_th edge
ILPDCWrapper()
Constructor.
double compute(const FeatureMap fm, PairsType &pairs, Size verbose_level) const
double computeSliceOld_(const FeatureMap fm, PairsType &pairs, const PairsIndex margin_left, const PairsIndex margin_right, const Size verbose_level) const
slicing the problem into subproblems
void updateFeatureVariant_(FeatureType_ &f_set, const String &rota_l, const Size &v) const
double computeSlice_(const FeatureMap fm, PairsType &pairs, const PairsIndex margin_left, const PairsIndex margin_right, const Size verbose_level) const
slicing the problem into subproblems
Map< String, std::set< Size > > FeatureType_
Definition: ILPDCWrapper.h:89
virtual ~ILPDCWrapper()
Destructor.
PairsType::size_type PairsIndex
Definition: ILPDCWrapper.h:56
Map class based on the STL map (containing several convenience functions)
Definition: Map.h:52
A more convenient string class.
Definition: String.h:60
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47