OpenMS  2.8.0
LabeledPairFinder.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Marc Sturm $
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34 
35 #pragma once
36 
38 
39 #include <cmath>
40 
41 namespace OpenMS
42 {
55  class OPENMS_DLLAPI LabeledPairFinder :
56  public BaseGroupFinder
57  {
58 
59 public:
60 
63 
65  inline ~LabeledPairFinder() override
66  {
67  }
68 
71  {
72  return new LabeledPairFinder();
73  }
74 
76  static const String getProductName()
77  {
78  return "labeled_pair_finder";
79  }
80 
91  void run(const std::vector<ConsensusMap> & input_maps, ConsensusMap & result_map) override;
92 
93 protected:
94 
96  inline double PValue_(double x, double m, double sig1, double sig2)
97  {
98  if (m < x)
99  {
100  return 1 - std::erf((x - m) / sig2 / 0.707106781);
101  }
102  else
103  {
104  return 1 - std::erf((m - x) / sig1 / 0.707106781);
105  }
106  }
107 
108 private:
109 
112 
115 
116  }; // end of class LabeledPairFinder
117 
118 } // end of namespace OpenMS
119 
The base class of all element group finding algorithms.
Definition: BaseGroupFinder.h:64
A container for consensus elements.
Definition: ConsensusMap.h:90
The LabeledPairFinder allows the matching of labeled features (features with a fixed distance).
Definition: LabeledPairFinder.h:57
LabeledPairFinder()
Default constructor.
~LabeledPairFinder() override
Destructor.
Definition: LabeledPairFinder.h:65
LabeledPairFinder & operator=(const LabeledPairFinder &source)
Assignment operator not implemented => private.
void run(const std::vector< ConsensusMap > &input_maps, ConsensusMap &result_map) override
Run the algorithm.
LabeledPairFinder(const LabeledPairFinder &source)
Copy constructor not implemented => private.
static BaseGroupFinder * create()
Returns an instance of this class.
Definition: LabeledPairFinder.h:70
static const String getProductName()
Returns the name of this module.
Definition: LabeledPairFinder.h:76
double PValue_(double x, double m, double sig1, double sig2)
return the p-value at position x for the bi-Gaussian distribution with mean m and standard deviation ...
Definition: LabeledPairFinder.h:96
A more convenient string class.
Definition: String.h:60
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47