OpenMS  2.8.0
SpectrumAlignmentScore.h
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35 #pragma once
36 
38 #include <OpenMS/KERNEL/Peak1D.h>
43 
44 #include <cmath>
45 
46 namespace OpenMS
47 {
48 
68  class OPENMS_DLLAPI SpectrumAlignmentScore :
70  {
71 public:
72 
73  // @name Constructors and Destructors
74  // @{
77 
80 
83  // @}
84 
85  // @name Operators
86  // @{
89 
91  double operator()(const PeakSpectrum & spec1, const PeakSpectrum & spec2) const override;
92 
93  double operator()(const PeakSpectrum & spec) const override;
94  // @}
95 
96  // @name Accessors
97  // @{
100 
102  static const String getProductName()
103  {
104  return "SpectrumAlignmentScore";
105  }
106 
107  // @}
108 
109  };
110 
111 }
The representation of a 1D spectrum.
Definition: MSSpectrum.h:70
Base class for compare functors of spectra, that return a similarity value for two spectra.
Definition: PeakSpectrumCompareFunctor.h:54
Similarity score via spectra alignment.
Definition: SpectrumAlignmentScore.h:70
~SpectrumAlignmentScore() override
destructor
double operator()(const PeakSpectrum &spec1, const PeakSpectrum &spec2) const override
function call operator, calculates the similarity
double operator()(const PeakSpectrum &spec) const override
calculates self similarity
static PeakSpectrumCompareFunctor * create()
Definition: SpectrumAlignmentScore.h:99
SpectrumAlignmentScore & operator=(const SpectrumAlignmentScore &source)
assignment operator
SpectrumAlignmentScore()
default constructor
static const String getProductName()
Definition: SpectrumAlignmentScore.h:102
SpectrumAlignmentScore(const SpectrumAlignmentScore &source)
copy constructor
A more convenient string class.
Definition: String.h:60
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47