OpenMS  2.8.0
TransitionPQPFile.h
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31 // $Maintainer: George Rosenberger $
32 // $Authors: George Rosenberger, Hannes Roest $
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34 
35 #pragma once
36 
38 
39 namespace OpenMS
40 {
41 
215  class OPENMS_DLLAPI TransitionPQPFile :
216  public TransitionTSVFile
217  {
218 
219 private:
220 
228  void readPQPInput_(const char* filename, std::vector<TSVTransition>& transition_list, bool legacy_traml_id = false);
229 
235  void writePQPOutput_(const char* filename, OpenMS::TargetedExperiment& targeted_exp);
236 
237 public:
238 
242 
244  ~TransitionPQPFile() override;
246 
253  void convertTargetedExperimentToPQP(const char* filename, OpenMS::TargetedExperiment& targeted_exp);
254 
262  void convertPQPToTargetedExperiment(const char* filename, OpenMS::TargetedExperiment& targeted_exp, bool legacy_traml_id = false);
263 
271  void convertPQPToTargetedExperiment(const char* filename, OpenSwath::LightTargetedExperiment& targeted_exp, bool legacy_traml_id = false);
272 
273  };
274 }
275 
276 
A description of a targeted experiment containing precursor and production ions.
Definition: TargetedExperiment.h:65
This class supports reading and writing of PQP files.
Definition: TransitionPQPFile.h:217
~TransitionPQPFile() override
Destructor.
void convertPQPToTargetedExperiment(const char *filename, OpenMS::TargetedExperiment &targeted_exp, bool legacy_traml_id=false)
Read in a PQP file and construct a targeted experiment (TraML structure)
void writePQPOutput_(const char *filename, OpenMS::TargetedExperiment &targeted_exp)
Write a TargetedExperiment to a file.
void convertPQPToTargetedExperiment(const char *filename, OpenSwath::LightTargetedExperiment &targeted_exp, bool legacy_traml_id=false)
Read in a PQP file and construct a targeted experiment (Light transition structure)
void convertTargetedExperimentToPQP(const char *filename, OpenMS::TargetedExperiment &targeted_exp)
Write out a targeted experiment (TraML structure) into a PQP file.
void readPQPInput_(const char *filename, std::vector< TSVTransition > &transition_list, bool legacy_traml_id=false)
Read PQP SQLite file.
This class supports reading and writing of OpenSWATH transition lists.
Definition: TransitionTSVFile.h:147
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
Definition: TransitionExperiment.h:207