OpenMS  2.8.0
Transitions.h
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31 // $Maintainer: Hannes Roest $
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34 
35 #pragma once
36 
37 #include <OpenMS/OPENSWATHALGO/OpenSwathAlgoConfig.h>
38 #include <string>
39 #include <vector>
41 
42 namespace OpenSwath
43 {
44 
45  struct OPENSWATHALGO_DLLAPI Peptide
46  {
47  double rt;
48  int charge;
49  std::string sequence;
50  std::string id;
51  int getChargeState() const
52  {
53  return charge;
54  }
55 
56  std::vector<LightModification> modifications;
57  std::vector<LightTransition> transitions;
58  };
59 
60  struct OPENSWATHALGO_DLLAPI Protein
61  {
62  std::string id;
63  std::string sequence;
64  std::vector<Peptide> peptides;
65  };
66 
67  struct OPENSWATHALGO_DLLAPI TargetedExperiment
68  {
69  std::vector<Protein> proteins;
70  };
71 
72 }
73 
Definition: Scoring.h:44
std::vector< Protein > proteins
Definition: Transitions.h:69
std::vector< Peptide > peptides
Definition: Transitions.h:64
std::string sequence
Definition: Transitions.h:63
std::string id
Definition: Transitions.h:62
Definition: Transitions.h:61
Definition: Transitions.h:68
Definition: Transitions.h:46
std::vector< LightTransition > transitions
Definition: Transitions.h:57
int getChargeState() const
Definition: Transitions.h:51
std::vector< LightModification > modifications
Definition: Transitions.h:56
std::string sequence
Definition: Transitions.h:49
double rt
Definition: Transitions.h:47
int charge
Definition: Transitions.h:48
std::string id
Definition: Transitions.h:50