OpenMS  2.8.0
Classes
Identification

Protein and peptide identification classes. More...

Collaboration diagram for Identification:

Classes

class  CompNovoIdentification
 run with CompNovoIdentification More...
 
class  CompNovoIdentificationBase
 run with CompNovoIdentificationBase More...
 
class  CompNovoIdentificationCID
 run with CompNovoIdentificationCID More...
 
class  AccurateMassSearchEngine
 An algorithm to search for exact mass matches from a spectrum against a database (e.g. HMDB). More...
 
class  ConsensusIDAlgorithm
 Abstract base class for all ConsensusID algorithms (that calculate a consensus from multiple ID runs). More...
 
class  ConsensusIDAlgorithmAverage
 Calculates a consensus from multiple ID runs by averaging the search scores. More...
 
class  ConsensusIDAlgorithmBest
 Calculates a consensus from multiple ID runs by taking the best search score. More...
 
class  ConsensusIDAlgorithmIdentity
 Abstract base class for ConsensusID algorithms that compare only identical sequences. More...
 
class  ConsensusIDAlgorithmPEPIons
 Calculates a consensus from multiple ID runs based on PEPs and shared ions. More...
 
class  ConsensusIDAlgorithmPEPMatrix
 Calculates a consensus from multiple ID runs based on PEPs and sequence similarities. More...
 
class  ConsensusIDAlgorithmRanks
 Calculates a consensus from multiple ID runs based on the ranks of the search hits. More...
 
class  ConsensusIDAlgorithmSimilarity
 Abstract base class for ConsensusID algorithms that take peptide similarity into account. More...
 
class  ConsensusIDAlgorithmWorst
 Calculates a consensus from multiple ID runs by taking the worst search score (conservative approach). More...
 
class  FalseDiscoveryRate
 Calculates false discovery rates (FDR) from identifications. More...
 
class  IDBoostGraph
 Creates and maintains a boost graph based on the OpenMS ID datastructures. More...
 
class  IDDecoyProbability
 IDDecoyProbability calculates probabilities using decoy approach. More...
 
class  IDRipper
 Ripping protein/peptide identification according their file origin. More...
 
class  PeptideProteinResolution
 Resolves shared peptides based on protein scores. More...
 

Detailed Description

Protein and peptide identification classes.