ConsensusIDAlgorithmSimilarity.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Hendrik Weisser $
// $Authors: Andreas Bertsch, Marc Sturm, Sven Nahnsen, Hendrik Weisser $
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#pragma once
 
#include <OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h>
 
namespace OpenMS
{
  class OPENMS_DLLAPI ConsensusIDAlgorithmSimilarity :
    public ConsensusIDAlgorithm
  {
  protected:
    ConsensusIDAlgorithmSimilarity();
 
    typedef std::map<std::pair<AASequence, AASequence>, double> SimilarityCache;
 
    SimilarityCache similarities_;
 
    virtual double getSimilarity_(AASequence seq1, AASequence seq2) = 0;
 
  private:
    ConsensusIDAlgorithmSimilarity(const ConsensusIDAlgorithmSimilarity&);
 
    ConsensusIDAlgorithmSimilarity& operator=(const ConsensusIDAlgorithmSimilarity&);
 
    void apply_(std::vector<PeptideIdentification>& ids,
        const std::map<String, String>& se_info,
        SequenceGrouping& results) override;
  };
 
} // namespace OpenMS