ExperimentalDesignFile.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2023.
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// This software is released under a three-clause BSD license:
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// $Maintainer: Timo Sachsenberg $
// $Authors: Timo Sachsenberg, Lukas Zimmermann $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/DATASTRUCTURES/String.h>
 
#include <map>
#include <set>
 
namespace OpenMS
{
  class ExperimentalDesign;
  class TextFile; 
  class OPENMS_DLLAPI ExperimentalDesignFile
  {
    public:
 
    static ExperimentalDesign load(const String& tsv_file, bool require_spectra_files);
 
    static ExperimentalDesign load(const TextFile& text_file, const bool require_spectra_file, String filename);
 
    private:
    static bool isOneTableFile_(const TextFile& text_file);
    static ExperimentalDesign parseOneTableFile_(const TextFile& text_file, const String& tsv_file, bool require_spectra_file);
    static ExperimentalDesign parseTwoTableFile_(const TextFile& text_file, const String& tsv_file, bool require_spectra_file);
    static void parseHeader_(
      const StringList &header,
      const String &filename,
      std::map <String, Size> &column_map,
      const std::set <String> &required,
      const std::set <String> &optional,
      bool allow_other_header);
 
    static void parseErrorIf_(const bool test, const String &filename, const String &message);
  };
}