Fitter1D.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Timo Sachsenberg $
// $Authors: $
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#pragma once
 
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/DATASTRUCTURES/IsotopeCluster.h>
#include <OpenMS/KERNEL/Feature.h>
#include <OpenMS/KERNEL/Peak1D.h>
#include <OpenMS/MATH/STATISTICS/BasicStatistics.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderDefs.h>
#include <memory>
 
namespace OpenMS
{
  class InterpolationModel;
 
  class OPENMS_DLLAPI Fitter1D : public DefaultParamHandler, public FeatureFinderDefs
  {
  public:
    typedef IsotopeCluster::IndexSet IndexSet;
    typedef IsotopeCluster::ChargedIndexSet ChargedIndexSet;
    typedef Feature::CoordinateType CoordinateType;
    typedef Feature::QualityType QualityType;
    typedef Peak1D PeakType;
    typedef std::vector<PeakType> RawDataArrayType;
    typedef RawDataArrayType::iterator PeakIterator;
 
    Fitter1D();
 
    Fitter1D(const Fitter1D& source);
 
    ~Fitter1D() override;
 
    Fitter1D& operator=(const Fitter1D& source);
 
    virtual QualityType fit1d(const RawDataArrayType& /* range */, std::unique_ptr<InterpolationModel>& /* model */);
 
    static void registerChildren();
 
  protected:
    CoordinateType tolerance_stdev_box_;
    Math::BasicStatistics<> statistics_;
    CoordinateType interpolation_step_;
 
    void updateMembers_() override;
  };
 
} // namespace OpenMS