OpenMS
ItraqFourPlexQuantitationMethod.h
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34 
35 #pragma once
36 
38 
39 namespace OpenMS
40 {
46  class OPENMS_DLLAPI ItraqFourPlexQuantitationMethod :
48  {
49 public:
52 
55 
58 
61 
64 
65  const String& getMethodName() const override;
66 
67  const IsobaricChannelList& getChannelInformation() const override;
68 
69  Size getNumberOfChannels() const override;
70 
72 
73  Size getReferenceChannel() const override;
74 
76 
77 private:
80 
82  static const String name_;
83 
86 
87 protected:
90 
92  void updateMembers_() override;
93  };
94 } // namespace
95 
Abstract base class describing an isobaric quantitation method in terms of the used channels and an i...
Definition: IsobaricQuantitationMethod.h:58
std::vector< IsobaricChannelInformation > IsobaricChannelList
Definition: IsobaricQuantitationMethod.h:98
iTRAQ 4 plex quantitation to be used with the IsobaricQuantitation.
Definition: ItraqFourPlexQuantitationMethod.h:48
const IsobaricChannelList & getChannelInformation() const override
Returns information on the different channels used by the quantitation method.
ItraqFourPlexQuantitationMethod & operator=(const ItraqFourPlexQuantitationMethod &rhs)
Assignment operator.
Size reference_channel_
The reference channel for this experiment.
Definition: ItraqFourPlexQuantitationMethod.h:85
const String & getMethodName() const override
Methods to implement from IsobaricQuantitationMethod.
Size getReferenceChannel() const override
Returns the index of the reference channel in the IsobaricChannelList (see IsobaricQuantitationMethod...
void setDefaultParams_()
implemented for DefaultParamHandler
Size getNumberOfChannels() const override
Gives the number of channels available for this quantitation method.
ItraqFourPlexQuantitationMethod(const ItraqFourPlexQuantitationMethod &other)
Copy c'tor.
void updateMembers_() override
implemented for DefaultParamHandler
static const String name_
The name of the quantitation method.
Definition: ItraqFourPlexQuantitationMethod.h:82
Matrix< double > getIsotopeCorrectionMatrix() const override
Returns an isotope correction matrix suitable for the given quantitation method.
IsobaricChannelList channels_
the actual information on the different itraq4plex channels.
Definition: ItraqFourPlexQuantitationMethod.h:79
A more convenient string class.
Definition: String.h:60
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48