OpenMS
LabelFreeLabeler.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Stephan Aiche$
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34 
35 #pragma once
36 
38 
39 namespace OpenMS
40 {
41 
45  class OPENMS_DLLAPI LabelFreeLabeler :
46  public BaseLabeler
47  {
48 public:
49 
52 
54  ~LabelFreeLabeler() override;
55 
57  static BaseLabeler* create()
58  {
59  return new LabelFreeLabeler();
60  }
61 
63  static const String getProductName()
64  {
65  return "labelfree";
66  }
67 
68  // redeclaration of virtual methods
69  void preCheck(Param& param) const override;
70 
71  void setUpHook(SimTypes::FeatureMapSimVector& /* channels */) override;
72 
73  void postDigestHook(SimTypes::FeatureMapSimVector& /* features_to_simulate */) override;
74 
75  void postRTHook(SimTypes::FeatureMapSimVector& /* features_to_simulate */) override;
76 
77  void postDetectabilityHook(SimTypes::FeatureMapSimVector& /* features_to_simulate */) override;
78 
79  void postIonizationHook(SimTypes::FeatureMapSimVector& /* features_to_simulate */) override;
80 
81  void postRawMSHook(SimTypes::FeatureMapSimVector& /* features_to_simulate */) override;
82 
83  void postRawTandemMSHook(SimTypes::FeatureMapSimVector& /* features_to_simulate */, SimTypes::MSSimExperiment& /* simulated map */) override;
84  };
85 } // namespace OpenMS
86 
Abstract base class for all kinds of labeling techniques.
Definition: BaseLabeler.h:51
Abstract base class for all kinds of labeling techniques.
Definition: LabelFreeLabeler.h:47
void postRawTandemMSHook(SimTypes::FeatureMapSimVector &, SimTypes::MSSimExperiment &) override
Labeling after Tandem MS (e.g. iTRAQ)
LabelFreeLabeler()
default constructor
void postIonizationHook(SimTypes::FeatureMapSimVector &) override
Labeling after ionization.
static BaseLabeler * create()
create new GaussModel object (needed by Factory)
Definition: LabelFreeLabeler.h:57
void postRTHook(SimTypes::FeatureMapSimVector &) override
Labeling after rt simulation.
void postDigestHook(SimTypes::FeatureMapSimVector &) override
Labeling between digestion and rt simulation.
void setUpHook(SimTypes::FeatureMapSimVector &) override
Hook to prepare the simulation process.
~LabelFreeLabeler() override
destructor
void postRawMSHook(SimTypes::FeatureMapSimVector &) override
Labeling after raw signal generation.
void postDetectabilityHook(SimTypes::FeatureMapSimVector &) override
Labeling after detectability simulation.
static const String getProductName()
name of the model (needed by Factory)
Definition: LabelFreeLabeler.h:63
void preCheck(Param &param) const override
Checks the (simulation) params passed if they are consistent with the labeling technique.
In-Memory representation of a mass spectrometry run.
Definition: MSExperiment.h:72
Management and storage of parameters / INI files.
Definition: Param.h:70
A more convenient string class.
Definition: String.h:60
std::vector< FeatureMapSim > FeatureMapSimVector
Sim FeatureMap Vector.
Definition: SimTypes.h:99
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48