OpenMS
MRMFeaturePickerFile.h
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31 // $Maintainer: Douglas McCloskey, Pasquale Domenico Colaianni $
32 // $Authors: Douglas McCloskey, Pasquale Domenico Colaianni $
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34 
35 #pragma once
36 
37 #include <OpenMS/config.h> // OPENMS_DLLAPI
39 #include <OpenMS/FORMAT/CsvFile.h>
40 #include <map>
41 
42 namespace OpenMS
43 {
61  class OPENMS_DLLAPI MRMFeaturePickerFile :
62  public CsvFile
63  {
64 public:
66  MRMFeaturePickerFile() = default;
68  ~MRMFeaturePickerFile() override = default;
69 
85  void load(
86  const String& filename,
87  std::vector<MRMFeaturePicker::ComponentParams>& cp_list,
88  std::vector<MRMFeaturePicker::ComponentGroupParams>& cgp_list
89  );
90 
91 protected:
103  const StringList& line,
104  const std::map<String, Size>& headers,
107  ) const;
108 
117  void setCastValue_(const String& key, const String& value, Param& params) const;
118  };
119 }
120 
This class handles csv files. Currently only loading is implemented.
Definition: CsvFile.h:51
_MRMFeaturePickerFile_ loads components and components groups parameters from a .csv file.
Definition: MRMFeaturePickerFile.h:63
bool extractParamsFromLine_(const StringList &line, const std::map< String, Size > &headers, MRMFeaturePicker::ComponentParams &cp, MRMFeaturePicker::ComponentGroupParams &cgp) const
Extracts the information from a `StringList` and saves it into the correct data structures.
MRMFeaturePickerFile()=default
Constructor.
void setCastValue_(const String &key, const String &value, Param &params) const
Helper method which takes care of converting the given value to the desired type, based on the header...
void load(const String &filename, std::vector< MRMFeaturePicker::ComponentParams > &cp_list, std::vector< MRMFeaturePicker::ComponentGroupParams > &cgp_list)
Loads the file's data and saves it into vectors of `ComponentParams` and `ComponentGroupParams`.
~MRMFeaturePickerFile() override=default
Destructor.
Structure to contain information about a component group with its parameters.
Definition: MRMFeaturePicker.h:74
Structure to contain information about a single component with its parameters.
Definition: MRMFeaturePicker.h:66
Management and storage of parameters / INI files.
Definition: Param.h:70
A more convenient string class.
Definition: String.h:60
std::vector< String > StringList
Vector of String.
Definition: ListUtils.h:70
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48