OpenMS
MapAlignmentEvaluationAlgorithmPrecision.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2023.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Katharina Albers $
33 // --------------------------------------------------------------------------
34 
35 #pragma once
36 
38 
39 namespace OpenMS
40 {
50  {
51 public:
54 
57 
61  void evaluate(const ConsensusMap & consensus_map_in, const ConsensusMap & consensus_map_gt, const double & rt_dev, const double & mz_dev, const Peak2D::IntensityType & int_dev, const bool use_charge, double & out) override;
62 
65  {
67  }
68 
71  {
72  return "precision";
73  }
74 
75 private:
76 
81 
82  };
83 
84 } // namespace OpenMS
85 
A container for consensus elements.
Definition: ConsensusMap.h:92
Caap evaluation algorithm to obtain a precision value.
Definition: MapAlignmentEvaluationAlgorithmPrecision.h:50
~MapAlignmentEvaluationAlgorithmPrecision() override
Destructor.
MapAlignmentEvaluationAlgorithmPrecision(const MapAlignmentEvaluationAlgorithmPrecision &)
Copy constructor intentionally not implemented -> private.
static String getProductName()
Returns the product name (for the Factory)
Definition: MapAlignmentEvaluationAlgorithmPrecision.h:70
void evaluate(const ConsensusMap &consensus_map_in, const ConsensusMap &consensus_map_gt, const double &rt_dev, const double &mz_dev, const Peak2D::IntensityType &int_dev, const bool use_charge, double &out) override
Applies the algorithm.
static MapAlignmentEvaluationAlgorithm * create()
Creates a new instance of this class (for Factory)
Definition: MapAlignmentEvaluationAlgorithmPrecision.h:64
MapAlignmentEvaluationAlgorithmPrecision()
Default constructor.
MapAlignmentEvaluationAlgorithmPrecision & operator=(const MapAlignmentEvaluationAlgorithmPrecision &)
Assignment operator intentionally not implemented -> private.
Base class for all Caap evaluation algorithms.
Definition: MapAlignmentEvaluationAlgorithm.h:48
float IntensityType
Intensity type.
Definition: Peak2D.h:62
A more convenient string class.
Definition: String.h:60
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48