MapUtilities.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2023.
//
// This software is released under a three-clause BSD license:
//  * Redistributions of source code must retain the above copyright
//    notice, this list of conditions and the following disclaimer.
//  * Redistributions in binary form must reproduce the above copyright
//    notice, this list of conditions and the following disclaimer in the
//    documentation and/or other materials provided with the distribution.
//  * Neither the name of any author or any participating institution
//    may be used to endorse or promote products derived from this software
//    without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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// --------------------------------------------------------------------------
// $Maintainer: Julianus Pfeuffer$
// $Authors: Julianus Pfeuffer $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/config.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <vector>
 
namespace OpenMS
{
  template <class MapType>
  class MapUtilities
  {
  public:
    template <class T>
    void applyFunctionOnPeptideHits(T&& f, bool include_unassigned = true)
    {
      for (auto& feat : static_cast<MapType&>(*this))
      {
        applyFunctionOnPeptideHits_(feat.getPeptideIdentifications(), f);
      }
      if (include_unassigned)
      {
        applyFunctionOnPeptideHits_(static_cast<MapType&>(*this).getUnassignedPeptideIdentifications(), f);
      }
    }
 
    template <class T>
    void applyFunctionOnPeptideIDs(T&& f, bool include_unassigned = true)
    {
      for (auto& feat : static_cast<MapType&>(*this))
      {
        applyFunctionOnPeptideIDs_(feat.getPeptideIdentifications(), f);
      }
      if (include_unassigned)
      {
        applyFunctionOnPeptideIDs_(static_cast<MapType&>(*this).getUnassignedPeptideIdentifications(), f);
      }
    }
 
    template <class T>
    void applyFunctionOnPeptideHits(T&& f, bool include_unassigned = true) const
    {
      for (const auto& feat : static_cast<MapType const&>(*this))
      {
        applyFunctionOnPeptideHits_(feat.getPeptideIdentifications(), f);
      }
      if (include_unassigned)
      {
        applyFunctionOnPeptideHits_(static_cast<MapType const&>(*this).getUnassignedPeptideIdentifications(), f);
      }
    }
 
    template <class T>
    void applyFunctionOnPeptideIDs(T&& f, bool include_unassigned = true) const
    {
      for (const auto& feat : static_cast<MapType const&>(*this))
      {
        applyFunctionOnPeptideIDs_(feat.getPeptideIdentifications(), f);
      }
      if (include_unassigned)
      {
        applyFunctionOnPeptideIDs_(static_cast<MapType const&>(*this).getUnassignedPeptideIdentifications(), f);
      }
    }
 
  private:
    template <class T>
    void applyFunctionOnPeptideIDs_(std::vector<PeptideIdentification>& idvec, T&& f)
    {
      for (auto& id : idvec)
      {
        f(id);
      }
    }
 
    template <class T>
    void applyFunctionOnPeptideHits_(std::vector<PeptideIdentification>& idvec, T&& f)
    {
      for (auto& id : idvec)
      {
        for (auto& hit : id.getHits())
        {
          f(hit);
        }
      }
    }
 
    template <class T>
    void applyFunctionOnPeptideIDs_(const std::vector<PeptideIdentification>& idvec, T&& f) const
    {
      for (const auto& id : idvec)
      {
        f(id);
      }
    }
 
    template <class T>
    void applyFunctionOnPeptideHits_(const std::vector<PeptideIdentification>& idvec, T&& f) const
    {
      for (const auto& id : idvec)
      {
        for (const auto& hit : id.getHits())
        {
          f(hit);
        }
      }
    }
  };
 
} // namespace OpenMS