OpenMS
MassDecomposition.h
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34 
35 #pragma once
36 
37 #include <OpenMS/config.h>
38 #include <OpenMS/CONCEPT/Types.h>
39 
40 #include <map>
41 
42 namespace OpenMS
43 {
44  class String;
45 
53  class OPENMS_DLLAPI MassDecomposition
54  {
55 public:
56 
63 
66 
68  explicit MassDecomposition(const String& deco);
70 
77 
80 
82  String toString() const;
83 
86 
89 
93 
99  bool operator<(const MassDecomposition& rhs) const;
100 
102  bool operator==(const String& deco) const;
103 
105  bool containsTag(const String& tag) const;
106 
108  bool compatible(const MassDecomposition& deco) const;
110 
111 protected:
112  std::map<char, Size> decomp_;
114  };
115 } // namespace OpenMS
116 
Class represents a decomposition of a mass into amino acids.
Definition: MassDecomposition.h:54
MassDecomposition operator+(const MassDecomposition &rhs) const
adds this decomposition and the decomposition given and returns a new composition
bool operator<(const MassDecomposition &rhs) const
less than predicate
String toString() const
returns the decomposition as a string
bool compatible(const MassDecomposition &deco) const
returns true if the mass decomposition if contained in this instance
bool operator==(const String &deco) const
equality operator
MassDecomposition()
default constructor
MassDecomposition(const MassDecomposition &deco)
copy constructor
Size number_of_max_aa_
Definition: MassDecomposition.h:113
bool containsTag(const String &tag) const
returns true if tag is contained in the mass decomposition
MassDecomposition & operator=(const MassDecomposition &rhs)
assignment operator
std::map< char, Size > decomp_
Definition: MassDecomposition.h:112
MassDecomposition(const String &deco)
constructor with String as parameter
MassDecomposition & operator+=(const MassDecomposition &d)
adds the mass decomposition d to this object
String toExpandedString() const
returns the decomposition as a string; instead of frequencies the amino acids are repeated
Size getNumberOfMaxAA() const
returns the max frequency of this composition
A more convenient string class.
Definition: String.h:60
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48