SwathTabWidget.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2023.
//
// This software is released under a three-clause BSD license:
//  * Redistributions of source code must retain the above copyright
//    notice, this list of conditions and the following disclaimer.
//  * Redistributions in binary form must reproduce the above copyright
//    notice, this list of conditions and the following disclaimer in the
//    documentation and/or other materials provided with the distribution.
//  * Neither the name of any author or any participating institution
//    may be used to endorse or promote products derived from this software
//    without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// --------------------------------------------------------------------------
 
#pragma once
 
// OpenMS_GUI config
#include <OpenMS/VISUAL/OpenMS_GUIConfig.h>
 
#include <OpenMS/DATASTRUCTURES/Param.h>
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/DATASTRUCTURES/ListUtils.h>
#include <OpenMS/VISUAL/MISC/ExternalProcessMBox.h>
#include <OpenMS/VISUAL/MISC/GUIHelpers.h>
#include <OpenMS/VISUAL/TableView.h>
 
#include <QTabWidget> // our base class
 
#include <vector>
#include <utility> // for std::pair
 
namespace Ui
{
  class SwathTabWidget;
}
 
namespace OpenMS
{
  class InputFile;
  class OutputDirectory;
  class ParamEditor;
 
 
  namespace Internal
  {
    class SwathTabWidget;
 
    class OPENMS_GUI_DLLAPI SwathTabWidget : public QTabWidget
    {
      Q_OBJECT
 
    public:
      template <typename> friend class WizardGUILock;
 
      explicit SwathTabWidget(QWidget *parent = nullptr);
      ~SwathTabWidget();
 
      StringList getMzMLInputFiles() const;
 
      QStringList getPyProphetOutputFileNames() const;
 
    private slots:
      void on_run_swath_clicked();
      void on_edit_advanced_parameters_clicked();
      void broadcastNewCWD_(const QString& new_cwd);
 
 
      void on_btn_runPyProphet_clicked();
 
      void on_btn_pyresults_clicked();
 
      void on_pushButton_clicked();
 
    private:
      bool findPythonScript_(const String& path_to_python_exe, String& script_name);
 
      void updateSwathParamFromWidgets_();
 
      void updateWidgetsfromSwathParam_();
 
      QString getCurrentOutDir_() const;
 
      std::vector<std::pair<String, bool>> getPyProphetInputFiles() const;
 
      void checkPyProphetInput_();
 
 
 
      void writeLog_(const QString& text, const QColor& color = "#000000", bool new_section = false);
      void writeLog_(const String& text, const QColor& color = "#000000", bool new_section = false);
 
      bool checkOSWInputReady_();
 
      Ui::SwathTabWidget *ui;
      Param swath_param_; 
      Param swath_param_wizard_; 
 
      StringList osw_result_files_; 
      ExternalProcessMBox ep_; 
    };
 
  }
} // ns OpenMS
 
// this is required to allow Ui_SwathTabWidget (auto UIC'd from .ui) to have a InputFile member
using InputFile = OpenMS::InputFile;
using OutputDirectory = OpenMS::OutputDirectory;
using ParamEditor = OpenMS::ParamEditor;
using TableView = OpenMS::TableView;