OpenMS
TMTEighteenPlexQuantitationMethod.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Stephan Aiche, Samuel Wein, Radu Suciu $
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34 
35 #pragma once
36 
37 #include <OpenMS/config.h>
38 
40 
41 namespace OpenMS
42 {
48  class OPENMS_DLLAPI TMTEighteenPlexQuantitationMethod :
50  {
51 public:
54 
56  ~TMTEighteenPlexQuantitationMethod() override = default;
57 
60 
63 
66 
67  const String& getMethodName() const override;
68 
69  const IsobaricChannelList& getChannelInformation() const override;
70 
71  Size getNumberOfChannels() const override;
72 
74 
75  Size getReferenceChannel() const override;
76 
78 
79  private:
82 
84  static const String name_;
85 
88 
90  static const std::vector<std::string> channel_names_;
91 
92  protected:
95 
97  void updateMembers_() override;
98  };
99 } // namespace
100 
Abstract base class describing an isobaric quantitation method in terms of the used channels and an i...
Definition: IsobaricQuantitationMethod.h:58
std::vector< IsobaricChannelInformation > IsobaricChannelList
Definition: IsobaricQuantitationMethod.h:98
A more convenient string class.
Definition: String.h:60
TMT 18plex quantitation to be used with the IsobaricQuantitation.
Definition: TMTEighteenPlexQuantitationMethod.h:50
static const std::vector< std::string > channel_names_
List of available channel names as they are presented to the user.
Definition: TMTEighteenPlexQuantitationMethod.h:90
const IsobaricChannelList & getChannelInformation() const override
Returns information on the different channels used by the quantitation method.
Size reference_channel_
The reference channel for this experiment.
Definition: TMTEighteenPlexQuantitationMethod.h:87
const String & getMethodName() const override
Methods to implement from IsobaricQuantitationMethod.
Size getReferenceChannel() const override
Returns the index of the reference channel in the IsobaricChannelList (see IsobaricQuantitationMethod...
void setDefaultParams_()
implemented for DefaultParamHandler
Size getNumberOfChannels() const override
Gives the number of channels available for this quantitation method.
TMTEighteenPlexQuantitationMethod(const TMTEighteenPlexQuantitationMethod &other)
Copy c'tor.
TMTEighteenPlexQuantitationMethod & operator=(const TMTEighteenPlexQuantitationMethod &rhs)
Assignment operator.
void updateMembers_() override
implemented for DefaultParamHandler
~TMTEighteenPlexQuantitationMethod() override=default
d'tor
static const String name_
The name of the quantitation method.
Definition: TMTEighteenPlexQuantitationMethod.h:84
Matrix< double > getIsotopeCorrectionMatrix() const override
Returns an isotope correction matrix suitable for the given quantitation method.
IsobaricChannelList channels_
the actual information on the different tmt18plex channels.
Definition: TMTEighteenPlexQuantitationMethod.h:81
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48