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OpenMS
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Filters the top Peaks in the given spectra according to a given schema/thresholdset
| pot. predecessor tools | → SpectraFilter → | pot. successor tools |
|---|---|---|
| PeakPickerWavelet | any tool operating on MS peak data (in mzML format) |
The command line parameters of this tool are:
SpectraFilterScaler -- Applies thresholdfilter to peak spectra.
Full documentation: http://www.openms.de/doxygen/release/3.0.0/html/TOPP_SpectraFilterScaler.html
Version: 3.0.0 Jul 14 2023, 11:57:33, Revision: be787e9
To cite OpenMS:
+ Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for
mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959.
Usage:
SpectraFilterScaler <options>
This tool has algorithm parameters that are not shown here! Please check the ini file for a detailed descript
ion or use the --helphelp option
Options (mandatory options marked with '*'):
-in <file>* Input file (valid formats: 'mzML')
-out <file>* Output file (valid formats: 'mzML')
Common TOPP options:
-ini <file> Use the given TOPP INI file
-threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1')
-write_ini <file> Writes the default configuration file
--help Shows options
--helphelp Shows all options (including advanced)
The following configuration subsections are valid:
- algorithm Algorithm parameter subsection.
You can write an example INI file using the '-write_ini' option.
Documentation of subsection parameters can be found in the doxygen documentation or the INIFileEditor.
For more information, please consult the online documentation for this tool:
- http://www.openms.de/doxygen/release/3.0.0/html/TOPP_SpectraFilterScaler.html
INI file documentation of this tool:
1.9.1