LabeledEval

Evaluation tool for isotope-labeled quantitation experiments.

The command line parameters of this tool are:

LabeledEval --  Evaluation tool for isotope-labeled quantitation experiments.
Full documentation: http://www.openms.de/doxygen/release/3.0.0/html/UTILS_LabeledEval.html
Version: 3.0.0 Jul 14 2023, 11:57:33, Revision: be787e9
To cite OpenMS:
 + Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for 
   mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959.

Usage:
  LabeledEval <options>

Options (mandatory options marked with '*'):
  -in <file>*        Feature result file (valid formats: 'featureXML')
  -truth <file>*     Expected result file. (valid formats: 'consensusXML')
  -rt_tol <tol>      Maximum allowed retention time deviation (default: '20.0')
  -mz_tol <tol>      Maximum allowed m/z deviation (divided by charge) (default: '0.25')
                     
Common UTIL options:
  -ini <file>        Use the given TOPP INI file
  -threads <n>       Sets the number of threads allowed to be used by the TOPP tool (default: '1')
  -write_ini <file>  Writes the default configuration file
  --help             Shows options
  --helphelp         Shows all options (including advanced)

INI file documentation of this tool:

Legend:

required parameter

advanced parameter

+LabeledEval Evaluation tool for isotope-labeled quantitation experiments.

version3.0.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'LabeledEval'

in Feature result fileinput file*.featureXML

truth Expected result file.input file*.consensusXML

rt_tol20.0 Maximum allowed retention time deviation

mz_tol0.25 Maximum allowed m/z deviation (divided by charge)

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue, false

forcefalse Overrides tool-specific checkstrue, false

testfalse Enables the test mode (needed for internal use only)true, false