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PeakGroup Member List

This is the complete list of members for PeakGroup, including all inherited members.

avg_da_error_PeakGroupprivate
avg_ppm_error_PeakGroupprivate
begin() const noexceptPeakGroup
begin() noexceptPeakGroup
charge_dummy enum valuePeakGroup
charge_score_PeakGroupprivate
clear_()PeakGroupprivate
empty() constPeakGroup
end() const noexceptPeakGroup
end() noexceptPeakGroup
getAbsChargeRange() constPeakGroup
getAbsDaError_(LogMzPeak &p) constPeakGroupprivate
getAbsPPMError_(const LogMzPeak &p) constPeakGroupprivate
getAvgDaError() constPeakGroup
getAvgPPMError() constPeakGroup
getChargeIntensity(int abs_charge) constPeakGroup
getChargeIsotopeCosine(int abs_charge) constPeakGroup
getChargeScore() constPeakGroup
getChargeSNR(int abs_charge) constPeakGroup
getIndex() constPeakGroup
getIntensity() constPeakGroup
getIsotopeCosine() constPeakGroup
getIsotopeDaDistance() constPeakGroup
getIsotopeIntensities() constPeakGroup
getMinNegativeIsotopeIndex() constPeakGroup
getMonoMass() constPeakGroup
getMzRange(int abs_charge) constPeakGroup
getNoisePeakBegin() const noexceptPeakGroup
getNoisePeakBegin() noexceptPeakGroup
getNoisePeakEnd() const noexceptPeakGroup
getNoisePeakEnd() noexceptPeakGroup
getNoisePeakPower_(const std::vector< LogMzPeak > &noisy_peaks, const std::vector< LogMzPeak > &signal_peaks) constPeakGroupprivate
getQscore() constPeakGroup
getQvalue(PeakGroup::TargetDummyType target_dummy_type=PeakGroup::TargetDummyType::target) constPeakGroup
getRepAbsCharge() constPeakGroup
getRepMzRange() constPeakGroup
getScanNumber() constPeakGroup
getSNR() constPeakGroup
getTargetDummyType() constPeakGroup
index_PeakGroupprivate
intensity_PeakGroupprivate
is_positive_PeakGroupprivate
is_targeted_PeakGroupprivate
iso_da_distance_PeakGroupprivate
isotope_cosine_score_PeakGroupprivate
isotope_dummy enum valuePeakGroup
isPositive() constPeakGroup
isSignalMZ(double mz, double tol) constPeakGroup
isTargeted() constPeakGroup
LogMzPeak typedefPeakGroupprivate
logMzpeaks_PeakGroupprivate
max_abs_charge_PeakGroupprivate
max_snr_abs_charge_PeakGroupprivate
min_abs_charge_PeakGroupprivate
min_negative_isotope_index_PeakGroupprivate
monoisotopic_mass_PeakGroupprivate
negative_iso_peaks_PeakGroupprivate
noise_dummy enum valuePeakGroup
operator<(const PeakGroup &a) constPeakGroup
operator=(const PeakGroup &t)=defaultPeakGroup
operator==(const PeakGroup &a) constPeakGroup
operator>(const PeakGroup &a) constPeakGroup
operator[](Size i) constPeakGroup
PeakGroup()=defaultPeakGroup
PeakGroup(int min_abs_charge, int max_abs_charge, bool is_positive)PeakGroupexplicit
PeakGroup(const PeakGroup &)=defaultPeakGroup
PeakGroup(PeakGroup &&other)=defaultPeakGroup
per_charge_cos_PeakGroupprivate
per_charge_int_PeakGroupprivate
per_charge_noise_pwr_PeakGroupprivate
per_charge_snr_PeakGroupprivate
per_charge_sum_signal_squared_PeakGroupprivate
per_isotope_int_PeakGroupprivate
PrecalculatedAveragine typedefPeakGroupprivate
push_back(const FLASHDeconvHelperStructs::LogMzPeak &pg)PeakGroup
Qscore(float qscore)PeakGroup
qscore_PeakGroupprivate
qvalue_PeakGroupprivate
recruitAllPeaksInSpectrum(const MSSpectrum &spec, double tol, const FLASHDeconvHelperStructs::PrecalculatedAveragine &avg, double mono_mass, const std::unordered_set< double > &excluded_peak_mzs)PeakGroup
reserve(Size n)PeakGroup
scan_number_PeakGroupprivate
setAbsChargeRange(int min_abs_charge, int max_abs_charge)PeakGroup
setAvgPPMError(float error)PeakGroup
setChargeIsotopeCosine(int abs_charge, float cos)PeakGroup
setChargeScore(float charge_score)PeakGroup
setChargeSNR(int abs_charge, float c_snr)PeakGroup
setIndex(uint i)PeakGroup
setIsotopeCosine(float cos)PeakGroup
setIsotopeDaDistance(double d)PeakGroup
setMonoisotopicMass(double mono_mass)PeakGroup
setQvalue(float q, PeakGroup::TargetDummyType target_dummy_type)PeakGroup
setRepAbsCharge(int max_snr_abs_charge)PeakGroup
setScanNumber(int scan_number)PeakGroup
setSNR(float snr)PeakGroup
setTargetDummyType(PeakGroup::TargetDummyType index)PeakGroup
setTargeted()PeakGroup
size() const noexceptPeakGroup
snr_PeakGroupprivate
sort()PeakGroup
swap(std::vector< FLASHDeconvHelperStructs::LogMzPeak > &x)PeakGroup
target enum valuePeakGroup
target_dummy_type_PeakGroupprivate
TargetDummyType enum namePeakGroup
updateAvgDaError_()PeakGroupprivate
updateAvgPPMError_()PeakGroupprivate
updateChargeFitScoreAndChargeIntensities_()PeakGroupprivate
updateChargeRange_(std::vector< LogMzPeak > &noisy_peaks)PeakGroupprivate
updateMonoMassAndIsotopeIntensities()PeakGroup
updatePerChargeCos_(const FLASHDeconvHelperStructs::PrecalculatedAveragine &avg)PeakGroupprivate
updatePerChargeInformation_(const std::vector< LogMzPeak > &noisy_peaks)PeakGroupprivate
updateQscore(std::vector< LogMzPeak > &noisy_peaks, const FLASHDeconvHelperStructs::PrecalculatedAveragine &avg, double min_cos, int allowed_iso_error=1)PeakGroup
updateSNR_()PeakGroupprivate
~PeakGroup()=defaultPeakGroup