BedRModFile Class Reference

File adapter for bedRMod v2 files. More...

#include <OpenMS/FORMAT/BedRModFile.h>

Public Member Functions
	BedRModFile ()=default
	Default constructor.
	~BedRModFile ()=default
	Destructor.
void	store (const String &out_file, const IdentificationData &id_data, const String &chebi_mapping_file="") const
	Store RNA modification sites as bedRMod v2.

Detailed Description

File adapter for bedRMod v2 files.

Exports RNA modification sites from IdentificationData into the BED-style bedRMod v2 format.

Constructor & Destructor Documentation

BedRModFile()

BedRModFile ( )

default

Default constructor.

~BedRModFile()

~BedRModFile ( )

default

Destructor.

Member Function Documentation

store()

void store	(	const String &	out_file,
		const IdentificationData &	id_data,
		const String &	chebi_mapping_file = ""
	)		const

Store RNA modification sites as bedRMod v2.

Parameters

[in]	out_file	Output path for the bedRMod file.
[in]	id_data	Identification data containing RNA observation matches.
[in]	chebi_mapping_file	Optional CSV mapping file with columns "mod" (or "name") and "chebi_id" (or "chebi id").

Referenced by NucleicAcidSearchEngine::main_().