
- ADDED:



- REMOVED:

  - MascotAdapter -- Annotates MS/MS spectra using Mascot
  - XTandemAdapter -- Annotates MS/MS spectra using X! Tandem


- CHANGED PARAMETERS:

Tool name	Added/removed	Parameter name	Type	Default value	Restrictions	Supported formats
CometAdapter	+	enzyme	string	Trypsin	Chymotrypsin,Chymotrypsin/P,CNBr,Trypsin,Arg-C,Arg-C/P,Asp-N,no cleavage,unspecific cleavage,Lys-C,Lys-N,Lys-C/P,PepsinA,Trypsin/P,leukocyte elastase,glutamyl endopeptidase	
CometAdapter	-	enzyme	string	Trypsin	Trypsin,Arg-C,glutamyl endopeptidase,no cleavage,unspecific cleavage,Arg-C/P,Asp-N,Chymotrypsin,Chymotrypsin/P,CNBr,Lys-C,Lys-N,Lys-C/P,PepsinA,Trypsin/P,leukocyte elastase	
CometAdapter	+	second_enzyme	string		Chymotrypsin,Chymotrypsin/P,CNBr,Trypsin,Arg-C,Arg-C/P,Asp-N,no cleavage,unspecific cleavage,Lys-C,Lys-N,Lys-C/P,PepsinA,Trypsin/P,leukocyte elastase,glutamyl endopeptidase	
CometAdapter	-	second_enzyme	string		Trypsin,Arg-C,glutamyl endopeptidase,no cleavage,unspecific cleavage,Arg-C/P,Asp-N,Chymotrypsin,Chymotrypsin/P,CNBr,Lys-C,Lys-N,Lys-C/P,PepsinA,Trypsin/P,leukocyte elastase	
DecoyDatabase	+	enzyme	string	Trypsin	2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,Trypsin,Arg-C,Chymotrypsin,Chymotrypsin/P,CNBr,Formic_acid,Arg-C/P,Asp-N,Asp-N/B,Asp-N_ambic,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,Lys-C,Lys-N,Lys-C/P,PepsinA,TrypChymo,Trypsin/P,V8-DE,V8-E,leukocyte elastase,proline endopeptidase,glutamyl endopeptidase,Alpha-lytic protease,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P	
DecoyDatabase	-	enzyme	string	Trypsin	Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,CNBr,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,Trypsin,Arg-C,Arg-C/P,Asp-N,Asp-N/B,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,Formic_acid,Lys-C,Lys-N,Lys-C/P,PepsinA,TrypChymo,Trypsin/P,V8-DE,V8-E,leukocyte elastase,proline endopeptidase,glutamyl endopeptidase,Alpha-lytic protease,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P	
Digestor	+	enzyme	string	Trypsin	Arg-C/P,Asp-N,Asp-N/B,Asp-N_ambic,Chymotrypsin,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,Trypsin,Arg-C,Lys-C/P,PepsinA,TrypChymo,Trypsin/P,V8-DE,V8-E,leukocyte elastase,proline endopeptidase,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,Chymotrypsin/P,CNBr,Formic_acid,Lys-C,Lys-N	
Digestor	-	enzyme	string	Trypsin	Trypsin,Arg-C,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR,V8-DE,V8-E,Arg-C/P,Asp-N,Asp-N/B,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,CNBr,Formic_acid,Lys-C,Lys-N,Lys-C/P,PepsinA,TrypChymo,Trypsin/P,leukocyte elastase,proline endopeptidase,glutamyl endopeptidase	
DigestorMotif	+	enzyme	string	Trypsin	Arg-C/P,Asp-N,Asp-N/B,Asp-N_ambic,Chymotrypsin,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,Trypsin,Arg-C,Lys-C/P,PepsinA,TrypChymo,Trypsin/P,V8-DE,V8-E,leukocyte elastase,proline endopeptidase,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,Chymotrypsin/P,CNBr,Formic_acid,Lys-C,Lys-N	
DigestorMotif	-	enzyme	string	Trypsin	Trypsin,Arg-C,Clostripain/P,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,leukocyte elastase,proline endopeptidase,Arg-C/P,Asp-N,Asp-N/B,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,CNBr,Formic_acid,Lys-C,Lys-N,Lys-C/P,PepsinA,TrypChymo,Trypsin/P,V8-DE,V8-E,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate	
FeatureFinderCentroided	-	algorithm:debug	bool	false		
FeatureFinderCentroided	+	algorithm:write_debug	bool	false		
IDFileConverter	+	fasta_to_mzml:enzyme	string	Trypsin	Arg-C/P,Asp-N,Asp-N/B,Clostripain/P,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,Trypsin,Arg-C,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,leukocyte elastase,proline endopeptidase,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,CNBr,Formic_acid,Lys-C,Lys-N,Lys-C/P,PepsinA,TrypChymo,Trypsin/P,V8-DE,V8-E,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate	
IDFileConverter	-	fasta_to_mzml:enzyme	string	Trypsin	Clostripain/P,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,Trypsin,Arg-C,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,leukocyte elastase,proline endopeptidase,Arg-C/P,Asp-N,Asp-N/B,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,CNBr,Formic_acid,Lys-C,Lys-N,Lys-C/P,PepsinA,TrypChymo,Trypsin/P,V8-DE,V8-E,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate	
IDFilter	+	in_silico_digestion:enzyme	string	Trypsin	no cleavage,unspecific cleavage,Arg-C,Arg-C/P,Lys-C,Lys-N,Lys-C/P,PepsinA,TrypChymo,Trypsin/P,V8-DE,V8-E,Trypsin,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,leukocyte elastase,proline endopeptidase,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate,Asp-N,Asp-N/B,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,CNBr,Formic_acid	
IDFilter	-	in_silico_digestion:enzyme	string	Trypsin	V8-E,leukocyte elastase,proline endopeptidase,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,Lys-C/P,PepsinA,Asp-N/B,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,CNBr,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,Formic_acid,Lys-C,Lys-N,Arg-C,Arg-C/P,Asp-N,no cleavage,unspecific cleavage,Trypsin,TrypChymo,Trypsin/P,V8-DE	
IDFilter	+	missed_cleavages:enzyme	string	Trypsin	no cleavage,unspecific cleavage,Arg-C,Arg-C/P,Lys-C,Lys-N,Lys-C/P,PepsinA,TrypChymo,Trypsin/P,V8-DE,V8-E,Trypsin,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,leukocyte elastase,proline endopeptidase,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate,Asp-N,Asp-N/B,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,CNBr,Formic_acid	
IDFilter	-	missed_cleavages:enzyme	string	Trypsin	V8-E,leukocyte elastase,proline endopeptidase,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,Lys-C/P,PepsinA,Asp-N/B,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,CNBr,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,Formic_acid,Lys-C,Lys-N,Arg-C,Arg-C/P,Asp-N,no cleavage,unspecific cleavage,Trypsin,TrypChymo,Trypsin/P,V8-DE	
IsobaricAnalyzer	-	extraction:reporter_mass_shift	double	2.0000000000000000e-03	1.0e-04:0.5	
IsobaricAnalyzer	+	extraction:reporter_mass_shift	double	2.0e-03	1.0e-04:0.5	
MapAlignerPoseClustering	-	algorithm:superimposer:scaling_bucket_size	double	5.0000000000000000e-03	0.0:	
MapAlignerPoseClustering	+	algorithm:superimposer:scaling_bucket_size	double	5.0e-03	0.0:	
MSFraggerAdapter	+	PeptideIndexing:enzyme:name	string	auto	auto,Formic_acid,Lys-C,Lys-N,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,CNBr,Trypsin,Arg-C,Arg-C/P,Asp-N,Asp-N/B,TrypChymo,Trypsin/P,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,Lys-C/P,PepsinA,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,V8-DE,V8-E,leukocyte elastase,proline endopeptidase	
MSFraggerAdapter	-	PeptideIndexing:enzyme:name	string	auto	auto,Lys-C/P,PepsinA,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,CNBr,Trypsin,Arg-C,Arg-C/P,Asp-N,Asp-N/B,TrypChymo,Trypsin/P,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,Formic_acid,Lys-C,Lys-N,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,V8-DE,V8-E,leukocyte elastase,proline endopeptidase	
MSGFPlusAdapter	-	PeptideIndexing:enzyme:name	string	auto	auto,Arg-C,Arg-C/P,Trypsin,Asp-N,Asp-N/B,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR,PepsinA,TrypChymo,Trypsin/P,V8-DE,V8-E,leukocyte elastase,proline endopeptidase,Lys-N,Lys-C/P,CNBr,Formic_acid,Lys-C	
MSGFPlusAdapter	+	PeptideIndexing:enzyme:name	string	auto	auto,Arg-C,Arg-C/P,Trypsin,CNBr,Formic_acid,Lys-C,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,TrypChymo,Trypsin/P,V8-DE,V8-E,leukocyte elastase,proline endopeptidase,Lys-N,Lys-C/P,PepsinA,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,Asp-N,Asp-N/B,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P	
NoiseFilterGaussian	-	algorithm:gaussian_width	double	0.2		
NoiseFilterGaussian	+	algorithm:gaussian_width	double	0.2	0.0:	
NoiseFilterGaussian	-	algorithm:ppm_tolerance	double	10.0		
NoiseFilterGaussian	+	algorithm:ppm_tolerance	double	10.0	0.0:	
NucleicAcidSearchEngine	-	oligo:enzyme	string	no cleavage	RNase_T1,mazF,colicin_E5,no cleavage,unspecific cleavage,RNase_T1_Phosphatase,cusativin,RNase_U2,RNase_A,RNase_MC1,RNase_H,RNase_4,RNase_4p,RNase_4c	
NucleicAcidSearchEngine	+	oligo:enzyme	string	no cleavage	RNase_T1,RNase_U2,RNase_A,RNase_MC1,RNase_H,RNase_T1_Phosphatase,colicin_E5,no cleavage,unspecific cleavage,cusativin,RNase_4,RNase_4p,RNase_4c,mazF	
OpenPepXL	-	peptide:enzyme	string	Trypsin	Trypsin,proline endopeptidase,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,V8-DE,V8-E,leukocyte elastase,Arg-C,Arg-C/P,Asp-N,Lys-C/P,PepsinA,Asp-N/B,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,CNBr,TrypChymo,Trypsin/P,Formic_acid,Lys-C,Lys-N	
OpenPepXL	+	peptide:enzyme	string	Trypsin	Trypsin,V8-E,leukocyte elastase,Arg-C,Arg-C/P,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Lys-N,Lys-C/P,proline endopeptidase,glutamyl endopeptidase,PepsinA,TrypChymo,Asp-N,Asp-N/B,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,Trypsin/P,V8-DE,CNBr,Formic_acid,Lys-C,Clostripain/P,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage	
OpenSwathAnalyzer	+	algorithm:apply_im_peak_picking	bool	false		
OpenSwathAnalyzer	+	algorithm:merge_spectra_by_peak_width_fraction	double	0.15	1.0e-04:1.0	
OpenSwathAnalyzer	-	algorithm:Scores:use_sonar_scores	bool	false		
OpenSwathAnalyzer	-	algorithm:spacing_for_spectra_resampling	double	5.0000000000000000e-03	0.0:	
OpenSwathAnalyzer	+	algorithm:spacing_for_spectra_resampling	double	5.0e-03	0.0:	
OpenSwathAnalyzer	+	algorithm:spectrum_merge_method_type	string	fixed	fixed,dynamic	
OpenSwathRTNormalizer	+	algorithm:apply_im_peak_picking	bool	false		
OpenSwathRTNormalizer	+	algorithm:merge_spectra_by_peak_width_fraction	double	0.15	1.0e-04:1.0	
OpenSwathRTNormalizer	-	algorithm:Scores:use_sonar_scores	bool	false		
OpenSwathRTNormalizer	-	algorithm:spacing_for_spectra_resampling	double	5.0000000000000000e-03	0.0:	
OpenSwathRTNormalizer	+	algorithm:spacing_for_spectra_resampling	double	5.0e-03	0.0:	
OpenSwathRTNormalizer	+	algorithm:spectrum_merge_method_type	string	fixed	fixed,dynamic	
OpenSwathWorkflow	-	out_features	output-file			*.featureXML
OpenSwathWorkflow	+	out_features	output-file			*.osw,*.featureXML
OpenSwathWorkflow	+	out_features_type	string		osw,featureXML	
OpenSwathWorkflow	-	out_osw	output-file			*.osw
OpenSwathWorkflow	-	out_tsv	output-file			*.tsv
OpenSwathWorkflow	+	Scoring:apply_im_peak_picking	bool	false		
OpenSwathWorkflow	+	Scoring:merge_spectra_by_peak_width_fraction	double	0.15	1.0e-04:1.0	
OpenSwathWorkflow	-	Scoring:Scores:use_sonar_scores	bool	false		
OpenSwathWorkflow	-	Scoring:spacing_for_spectra_resampling	double	5.0000000000000000e-03	0.0:	
OpenSwathWorkflow	+	Scoring:spacing_for_spectra_resampling	double	5.0e-03	0.0:	
OpenSwathWorkflow	+	Scoring:spectrum_merge_method_type	string	fixed	fixed,dynamic	
OpenSwathWorkflow	-	sonar	bool	false		
PeptideIndexer	-	enzyme:name	string	auto	auto,glutamyl endopeptidase,Alpha-lytic protease,no cleavage,unspecific cleavage,Arg-C/P,Asp-N,Asp-N/B,Asp-N_ambic,Chymotrypsin,Trypsin,Arg-C,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,Chymotrypsin/P,CNBr,Formic_acid,Lys-C,Lys-N,Lys-C/P,PepsinA,TrypChymo,Trypsin/P,V8-DE,V8-E,leukocyte elastase,proline endopeptidase,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR	
PeptideIndexer	+	enzyme:name	string	auto	auto,Lys-C,Lys-N,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,V8-DE,V8-E,leukocyte elastase,proline endopeptidase,glutamyl endopeptidase,Arg-C/P,Asp-N,Asp-N/B,Asp-N_ambic,Chymotrypsin,Trypsin,Arg-C,Chymotrypsin/P,CNBr,Formic_acid,no cleavage,unspecific cleavage,Lys-C/P,PepsinA,TrypChymo,Trypsin/P	
ProteinInference	+	Algorithm:score_type	string		,PEP,q-value,RAW	
RNADigestor	+	enzyme	string	RNase_T1	colicin_E5,no cleavage,unspecific cleavage,RNase_MC1,RNase_H,RNase_4,RNase_4p,RNase_4c,mazF,RNase_T1_Phosphatase,cusativin,RNase_U2,RNase_A,RNase_T1	
RNADigestor	-	enzyme	string	RNase_T1	RNase_T1_Phosphatase,cusativin,RNase_T1,RNase_U2,RNase_A,RNase_MC1,RNase_H,RNase_4,RNase_4p,RNase_4c,mazF,colicin_E5,no cleavage,unspecific cleavage	
SageAdapter	+	enzyme	string	Trypsin	Arg-C/P,Asp-N,Asp-N/B,Asp-N_ambic,glutamyl endopeptidase,Alpha-lytic protease,no cleavage,unspecific cleavage,Trypsin,Arg-C,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,Chymotrypsin,Chymotrypsin/P,CNBr,Formic_acid,Lys-C,Lys-N,Lys-C/P,PepsinA,TrypChymo,Trypsin/P,V8-DE,V8-E,leukocyte elastase,proline endopeptidase,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR	
SageAdapter	-	enzyme	string	Trypsin	Trypsin,Arg-C,no cleavage,unspecific cleavage,glutamyl endopeptidase,Alpha-lytic protease,Arg-C/P,Asp-N,Asp-N/B,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,CNBr,Formic_acid,Lys-C,Lys-N,Lys-C/P,PepsinA,TrypChymo,Trypsin/P,V8-DE,V8-E,leukocyte elastase,proline endopeptidase,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR	
SageAdapter	-	PeptideIndexing:enzyme:name	string	auto	auto,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,V8-DE,V8-E,leukocyte elastase,proline endopeptidase,Trypsin,Lys-C/P,PepsinA,TrypChymo,Trypsin/P,Chymotrypsin/P,CNBr,Formic_acid,Lys-C,Lys-N,Arg-C,Arg-C/P,Asp-N,Asp-N/B,Asp-N_ambic,Chymotrypsin,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR	
SageAdapter	+	PeptideIndexing:enzyme:name	string	auto	auto,Lys-C/P,PepsinA,Asp-N/B,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,CNBr,leukocyte elastase,proline endopeptidase,glutamyl endopeptidase,unspecific cleavage,TrypChymo,Trypsin/P,V8-DE,V8-E,Arg-C,Arg-C/P,Asp-N,Trypsin,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,no cleavage,Formic_acid,Lys-C,Lys-N,Alpha-lytic protease,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR	
SequenceCoverageCalculator	+	out	output-file			*.idXML
SequenceCoverageCalculator	-	out	output-file			*.txt
SimpleSearchEngine	+	Search:enzyme	string	Trypsin	Trypsin,Arg-C,TrypChymo,Trypsin/P,V8-DE,V8-E,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,Lys-C/P,PepsinA,Arg-C/P,Asp-N,leukocyte elastase,proline endopeptidase,glutamyl endopeptidase,Alpha-lytic protease,Lys-C,Lys-N,Chymotrypsin/P,CNBr,Formic_acid,Asp-N/B,Asp-N_ambic,Chymotrypsin	
SimpleSearchEngine	-	Search:enzyme	string	Trypsin	Trypsin,TrypChymo,Trypsin/P,V8-DE,V8-E,2-iodobenzoate,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,Lys-C/P,PepsinA,Arg-C,Arg-C/P,leukocyte elastase,proline endopeptidase,glutamyl endopeptidase,Alpha-lytic protease,Asp-N,Asp-N/B,Asp-N_ambic,Chymotrypsin,Chymotrypsin/P,CNBr,Formic_acid,Lys-C,Lys-N	
