#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CONCEPT/LogStream.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/FORMAT/MzIdentMLFile.h>
#include <OpenMS/FORMAT/FileTypes.h>
#include <OpenMS/METADATA/PeptideIdentification.h>