ConsensusIDAlgorithmPEPMatrix.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Hendrik Weisser $
// $Authors: Andreas Bertsch, Marc Sturm, Sven Nahnsen, Hendrik Weisser $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.h>
#include <OpenMS/ANALYSIS/SEQUENCE/NeedlemanWunsch.h>
 
namespace OpenMS
{
  class OPENMS_DLLAPI ConsensusIDAlgorithmPEPMatrix :
    public ConsensusIDAlgorithmSimilarity
  {
  public:
    ConsensusIDAlgorithmPEPMatrix();
 
 
  private:
 
    NeedlemanWunsch alignment_;
 
    ConsensusIDAlgorithmPEPMatrix(const ConsensusIDAlgorithmPEPMatrix&);
 
    ConsensusIDAlgorithmPEPMatrix& operator=(const ConsensusIDAlgorithmPEPMatrix&);
 
    double getSimilarity_(AASequence seq1, AASequence seq2) override;
 
    // Docu in base class
    void updateMembers_() override;
  };
 
} // namespace OpenMS