EDTAFile.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/DATASTRUCTURES/StringUtils.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/KERNEL/ConsensusMap.h>
#include <OpenMS/KERNEL/Feature.h>
#include <OpenMS/FORMAT/TextFile.h>
 
#include <fstream>
#include <vector>
 
namespace OpenMS
{
  class OPENMS_DLLAPI EDTAFile
  {
public:
    EDTAFile();
    virtual ~EDTAFile();
 
private:
    double checkedToDouble_(const std::vector<std::string> & parts, Size index, double def = -1);
 
    Int checkedToInt_(const std::vector<std::string> & parts, Size index, Int def = -1);
 
public:
    void load(const std::string & filename, ConsensusMap & consensus_map);
 
    void store(const std::string & filename, const ConsensusMap & map) const;
 
 
    void store(const std::string & filename, const FeatureMap & map) const;
  };
} // namespace OpenMS