MRMFeatureFinderScoring.h File Reference

#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h>
#include <OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h>
#include <OpenMS/FEATUREFINDER/EmgScoring.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h>
#include <OpenMS/KERNEL/FeatureMap.h>
#include <OpenMS/KERNEL/MRMTransitionGroup.h>
#include <OpenMS/KERNEL/MRMFeature.h>
#include <OpenMS/KERNEL/MSSpectrum.h>
#include <OpenMS/KERNEL/MSChromatogram.h>
#include <OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h>
#include <OpenMS/OPENSWATHALGO/DATAACCESS/SwathMap.h>
#include <unordered_map>

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Classes
class	MRMFeatureFinderScoring
	The MRMFeatureFinder finds and scores peaks of transitions that co-elute. More...
struct	MRMFeatureFinderScoring::TransitionGroupCache
	Cache of transition-group invariant data to avoid per-feature recomputation. More...
struct	MRMFeatureFinderScoring::OpenSwath_Ind_Scores_Pooled
	Pooled variant of OpenSwath_Ind_Scores to allow pre-allocation and reuse. More...

Namespaces
namespace	OpenMS
	Main OpenMS namespace.

Macros
#define	USE_SP_INTERFACE

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Class Documentation

OpenMS::MRMFeatureFinderScoring::TransitionGroupCache

struct OpenMS::MRMFeatureFinderScoring::TransitionGroupCache

Cache of transition-group invariant data to avoid per-feature recomputation.

Collaboration diagram for MRMFeatureFinderScoring::TransitionGroupCache:

Class Members
vector< double >	normalized_library_intensity
vector< string >	precursor_ids
vector< string >	precursor_ids_openms
vector< string >	transition_native_ids
vector< string >	transition_native_ids_openms

Macro Definition Documentation

USE_SP_INTERFACE

#define USE_SP_INTERFACE