OpenMS
Loading...
Searching...
No Matches
Variables
OpenMS::Constants::UserParam Namespace Reference

Variables

const std::string IM = "IM"
 
const std::string FAIMS_CV = "FAIMS_CV"
 
const std::string ION_MOBILITY = "Ion Mobility"
 
const std::string INVERSE_REDUCED_ION_MOBILITY = "inverse reduced ion mobility"
 
const std::string MEAN_INVERSE_REDUCED_ION_MOBILITY_ARRAY = "mean inverse reduced ion mobility array"
 
const std::string ION_MOBILITY_CENTROID = "Ion Mobility Centroid"
 
const std::string FWHM_IM = "IM Peak FWHM"
 
const std::string FWHM_IM_AVG = "FWHM_im_avg"
 
const std::string FWHM_MZ_ppm = "FWHM_ppm"
 
const std::string FWHM_MZ_AVG = "FWHM_mz_avg"
 
const std::string SD = "SD"
 
const std::string SD_ppm = "SD_ppm"
 
const std::string IonNames = "IonNames"
 
const std::string CONCAT_PEPTIDE = "concatenated_peptides"
 
const std::string LOCALIZED_MODIFICATIONS_USERPARAM = "localized_modifications"
 
const std::string MERGED_CHROMATOGRAM_MZS = "merged_chromatogram_mzs"
 
const std::string PRECURSOR_ERROR_PPM_USERPARAM = "precursor_mz_error_ppm"
 
const std::string FRAGMENT_ERROR_MEDIAN_PPM_USERPARAM = "fragment_mz_error_median_ppm"
 
const std::string FRAGMENT_ERROR_PPM_USERPARAM = "fragment_mass_error_ppm"
 
const std::string FRAGMENT_ERROR_DA_USERPARAM = "fragment_mass_error_da"
 
const std::string FRAGMENT_ANNOTATION_USERPARAM = "fragment_annotation"
 
const std::string PSM_EXPLAINED_ION_CURRENT_USERPARAM = "PSM_explained_ion_current"
 
const std::string MATCHED_PREFIX_IONS_FRACTION = "matched_prefix_ions_fraction"
 
const std::string MATCHED_SUFFIX_IONS_FRACTION = "matched_suffix_ions_fraction"
 
const std::string MATCHED_PREFIX_IONS = "matched_prefix_ions"
 
const std::string MATCHED_SUFFIX_IONS = "matched_suffix_ions"
 
const std::string NUM_MATCHED_PEAKS = "num_matched_peaks"
 
const std::string LONGEST_PEPTIDE_ION_SEQUENCE = "longest_peptide_ion_sequence"
 
const std::string MATCHED_ION_CURRENT = "matched_ion_current"
 
const std::string SPECTRUM_REFERENCE = "spectrum_reference"
 
const std::string ID_MERGE_INDEX = "id_merge_index"
 
const std::string TARGET_DECOY = "target_decoy"
 
const std::string DELTA_SCORE = "delta_score"
 
const std::string ISOTOPE_ERROR = "isotope_error"
 
const std::string PEPTIDE_Q_VALUE = "peptide q-value"
 
const std::string OPENPEPXL_SCORE = "OpenPepXL:score"
 
const std::string OPENPEPXL_BETA_SEQUENCE = "sequence_beta"
 
const std::string OPENPEPXL_BETA_ACCESSIONS = "accessions_beta"
 
const std::string OPENPEPXL_XL_POS1 = "xl_pos1"
 
const std::string OPENPEPXL_XL_POS2 = "xl_pos2"
 
const std::string OPENPEPXL_XL_POS1_PROT = "xl_pos1_protein"
 
const std::string OPENPEPXL_XL_POS2_PROT = "xl_pos2_protein"
 
const std::string OPENPEPXL_XL_TYPE = "xl_type"
 
const std::string OPENPEPXL_XL_RANK = "xl_rank"
 
const std::string OPENPEPXL_XL_MOD = "xl_mod"
 
const std::string OPENPEPXL_XL_MASS = "xl_mass"
 
const std::string OPENPEPXL_XL_TERM_SPEC_ALPHA = "xl_term_spec_alpha"
 
const std::string OPENPEPXL_XL_TERM_SPEC_BETA = "xl_term_spec_beta"
 
const std::string OPENPEPXL_HEAVY_SPEC_RT = "spec_heavy_RT"
 
const std::string OPENPEPXL_HEAVY_SPEC_MZ = "spec_heavy_MZ"
 
const std::string OPENPEPXL_HEAVY_SPEC_REF = "spectrum_reference_heavy"
 
const std::string OPENPEPXL_TARGET_DECOY_ALPHA = "xl_target_decoy_alpha"
 
const std::string OPENPEPXL_TARGET_DECOY_BETA = "xl_target_decoy_beta"
 
const std::string OPENPEPXL_BETA_PEPEV_PRE = "BetaPepEv:pre"
 
const std::string OPENPEPXL_BETA_PEPEV_POST = "BetaPepEv:post"
 
const std::string OPENPEPXL_BETA_PEPEV_START = "BetaPepEv:start"
 
const std::string OPENPEPXL_BETA_PEPEV_END = "BetaPepEv:end"
 
const std::string XFDR_FDR = "XFDR:FDR"
 
const std::string IIMN_BEST_ION = "best ion"
 
const std::string IIMN_ADDUCT_PARTNERS = "partners"
 
const std::string IIMN_ROW_ID = "row ID"
 
const std::string IIMN_ANNOTATION_NETWORK_NUMBER = "annotation network number"
 
const std::string ADDUCT_GROUP = "Group"
 
const std::string IIMN_LINKED_GROUPS = "LinkedGroups"
 
const std::string DC_CHARGE_ADDUCTS = "dc_charge_adducts"
 
const std::string NUM_OF_MASSTRACES = "num_of_masstraces"
 
const std::string NUM_OF_DATAPOINTS = "num_of_datapoints"
 
const std::string MSM_METABOLITE_NAME = "Metabolite_Name"
 
const std::string MSM_INCHI_STRING = "Inchi_String"
 
const std::string MSM_SMILES_STRING = "SMILES_String"
 
const std::string MSM_PRECURSOR_ADDUCT = "Precursor_Ion"
 
const std::string MSM_SUM_FORMULA = "Sum_Formula"
 
const std::string MSM_CCS = "CCS"
 
const std::string BASE_NAME = "base_name"
 
const std::string SIGNIFICANCE_THRESHOLD = "significance_threshold"
 
const std::string RANK = "rank"
 
const std::string NUM_PEAKS = "num_peaks"
 
User parameters in spectra which have been annotated from subdirectories in SIRIUS workspace
const std::string SIRIUS_MZ = "mz"
 
const std::string SIRIUS_EXACTMASS = "exact_mass"
 
const std::string SIRIUS_EXPLANATION = "explanation"
 
const std::string SIRIUS_SCORE = "score"
 
const std::string SIRIUS_PEAKMZ = "peak_mz"
 
const std::string SIRIUS_ANNOTATED_SUMFORMULA = "annotated_sumformula"
 
const std::string SIRIUS_ANNOTATED_ADDUCT = "annotated_adduct"
 
const std::string SIRIUS_DECOY = "decoy"
 
const std::string SIRIUS_FEATURE_ID = "feat_id"
 

Variable Documentation

◆ ADDUCT_GROUP

const std::string ADDUCT_GROUP = "Group"
inline

User parameter name for group annotation in Feature by MetaboliteAdductDecharger to indicate matching Features with different adducts. String

◆ BASE_NAME

const std::string BASE_NAME = "base_name"
inline

User parameter name for the base name which links to underlying peak map String

◆ CONCAT_PEPTIDE

const std::string CONCAT_PEPTIDE = "concatenated_peptides"
inline

User parameter name for identifier of concatenated peptides String

◆ DC_CHARGE_ADDUCTS

const std::string DC_CHARGE_ADDUCTS = "dc_charge_adducts"
inline

User parameter name for adduct annotation in Feature by MetaboliteAdductDecharger. String

◆ DELTA_SCORE

const std::string DELTA_SCORE = "delta_score"
inline

User parameter name for a delta score: a score ratio between a rank x hit and the rank x+1 hit String

◆ FAIMS_CV

const std::string FAIMS_CV = "FAIMS_CV"
inline

User parameter name for FAIMS compensation voltage values Double (in volts)

◆ FRAGMENT_ANNOTATION_USERPARAM

const std::string FRAGMENT_ANNOTATION_USERPARAM = "fragment_annotation"
inline

User parameter name for fragment annotations String

◆ FRAGMENT_ERROR_DA_USERPARAM

const std::string FRAGMENT_ERROR_DA_USERPARAM = "fragment_mass_error_da"
inline

User parameter name for fragment mz error in dalton String

◆ FRAGMENT_ERROR_MEDIAN_PPM_USERPARAM

const std::string FRAGMENT_ERROR_MEDIAN_PPM_USERPARAM = "fragment_mz_error_median_ppm"
inline

User parameter name for median of fragment mz error in ppm String

◆ FRAGMENT_ERROR_PPM_USERPARAM

const std::string FRAGMENT_ERROR_PPM_USERPARAM = "fragment_mass_error_ppm"
inline

User parameter name for fragment mz error in ppm String

◆ FWHM_IM

const std::string FWHM_IM = "IM Peak FWHM"
inline

MetaValue key for storing PeakPickerIM ion mobility peak FWHM.

◆ FWHM_IM_AVG

const std::string FWHM_IM_AVG = "FWHM_im_avg"
inline

MetaValue key for storing MassTraceDetection im FWHM peak avrage PeakPickerIM outputs ion mobility peak FWHM 'FWHM_im' – those will be averaged across one trace.

◆ FWHM_MZ_AVG

const std::string FWHM_MZ_AVG = "FWHM_mz_avg"
inline

MetaValue key for storing MassTraceDetection mz FWHM peak average if PeakPickerHiRes outputs m/z peak FWHM 'FWHM_ppm' – those will be averaged across one trace.

◆ FWHM_MZ_ppm

const std::string FWHM_MZ_ppm = "FWHM_ppm"
inline

MetaValue key for storing PeakPickerHiRes m/z peak FWHM

◆ ID_MERGE_INDEX

const std::string ID_MERGE_INDEX = "id_merge_index"
inline

User parameter name to store the index of the primary MS run associated with the PeptideIdentification (it is not yet treated as a class attribute). Set by IDMerger algorithm or when reading ID files with info from multiple files (e.g., PercolatorInfile) String

◆ IIMN_ADDUCT_PARTNERS

const std::string IIMN_ADDUCT_PARTNERS = "partners"
inline

User parameter name for a ConsensusFeature. Represents the IIMN_ROW_IDs of related ConsensusFeatures defined by MetaboliteAdductDecharger. Partners are separated by semin colon. (Required for IIMN) List of String

◆ IIMN_ANNOTATION_NETWORK_NUMBER

const std::string IIMN_ANNOTATION_NETWORK_NUMBER = "annotation network number"
inline

User parameter name for a ConsensusFeature to indicate a metabolite with different adduct states. (Required for IIMN) String

◆ IIMN_BEST_ION

const std::string IIMN_BEST_ION = "best ion"
inline

User parameter name for best ion annotation in a ConsensusFeature, taken from the best quality feature. (Required for IIMN) String

◆ IIMN_LINKED_GROUPS

const std::string IIMN_LINKED_GROUPS = "LinkedGroups"
inline

User parameter name for a list of ADDUCT_GROUP annotations in a ConsensusFeature. (Required for IIMN) vector<std::string>

Referenced by TOPPGNPSExport::main_().

◆ IIMN_ROW_ID

const std::string IIMN_ROW_ID = "row ID"
inline

User parameter name for a unique ConsensusFeature index in a ConsensusMap. (Required for IIMN) String

◆ IM

const std::string IM = "IM"
inline

User parameter name for general ion mobility values (e.g., if not further specified) String

◆ INVERSE_REDUCED_ION_MOBILITY

const std::string INVERSE_REDUCED_ION_MOBILITY = "inverse reduced ion mobility"
inline

MetaValue key for inverse reduced ion mobility array (alternative name for 1/K0 from MSConvert). Uses the same CV term MS:1002815 as ION_MOBILITY.

◆ ION_MOBILITY

const std::string ION_MOBILITY = "Ion Mobility"
inline

MetaValue key for raw TimsTOF ion mobility array (from MSConvert). Note: TODO check. I saw files with other names as well (e.g. mean inverse ion mobility). PeakPickerIM expects to find 'Ion Mobility' array and will treat it as raw timsTOF data.

◆ ION_MOBILITY_CENTROID

const std::string ION_MOBILITY_CENTROID = "Ion Mobility Centroid"
inline

MetaValue key for centroided ion mobility data output by PeakPickerIM and MassTraceDetection. PeakPickerIM outputs centroided peaks with this array name. MassTraceDetection computes intensity-weighted ion mobility average of connected centroided peaks.

◆ IonNames

const std::string IonNames = "IonNames"
inline

User parameter name for ion names (e.g., annotated by TheoreticalSpectrumGenerator) String

◆ ISOTOPE_ERROR

const std::string ISOTOPE_ERROR = "isotope_error"
inline

User parameter name to indicate a monoisotopic peak misassignment. Used for precursor correction. (usually an integer x with the correction being -x times C13C12_MASSDIFF_U) String

◆ LOCALIZED_MODIFICATIONS_USERPARAM

const std::string LOCALIZED_MODIFICATIONS_USERPARAM = "localized_modifications"
inline

Metavalue to list unimod modifications used in site localization

◆ LONGEST_PEPTIDE_ION_SEQUENCE

const std::string LONGEST_PEPTIDE_ION_SEQUENCE = "longest_peptide_ion_sequence"
inline

◆ MATCHED_ION_CURRENT

const std::string MATCHED_ION_CURRENT = "matched_ion_current"
inline

◆ MATCHED_PREFIX_IONS

const std::string MATCHED_PREFIX_IONS = "matched_prefix_ions"
inline

◆ MATCHED_PREFIX_IONS_FRACTION

const std::string MATCHED_PREFIX_IONS_FRACTION = "matched_prefix_ions_fraction"
inline

◆ MATCHED_SUFFIX_IONS

const std::string MATCHED_SUFFIX_IONS = "matched_suffix_ions"
inline

◆ MATCHED_SUFFIX_IONS_FRACTION

const std::string MATCHED_SUFFIX_IONS_FRACTION = "matched_suffix_ions_fraction"
inline

◆ MEAN_INVERSE_REDUCED_ION_MOBILITY_ARRAY

const std::string MEAN_INVERSE_REDUCED_ION_MOBILITY_ARRAY = "mean inverse reduced ion mobility array"
inline

Alternative MetaValue key for ion mobility data (inverse reduced ion mobility). Some files store ion mobility data with this prefix instead of "Ion Mobility". Unit is typically volt-seconds per square centimeter (Vs/cm^2) also known as 1/k0. CV Term MS:1003006

◆ MERGED_CHROMATOGRAM_MZS

const std::string MERGED_CHROMATOGRAM_MZS = "merged_chromatogram_mzs"
inline

User parameter name for the M/Z of other chromatograms which have been merged into this one String

◆ MSM_CCS

const std::string MSM_CCS = "CCS"
inline

User parameter name for the collision cross section (CCS, in Angstrom^2) of a metabolite. (Used by MetaboliteSpectralMatcher for ion-mobility filtering) double

◆ MSM_INCHI_STRING

const std::string MSM_INCHI_STRING = "Inchi_String"
inline

User parameter name for the INCHI key associated with a metabolite. (Required for MetaboliteSpectralMatcher) String

◆ MSM_METABOLITE_NAME

const std::string MSM_METABOLITE_NAME = "Metabolite_Name"
inline

User parameter name for the name/description of a metabolite. (Required for MetaboliteSpectralMatcher) String

◆ MSM_PRECURSOR_ADDUCT

const std::string MSM_PRECURSOR_ADDUCT = "Precursor_Ion"
inline

User parameter name for the precursor adduct ion of a metabolite. (Required for MetaboliteSpectralMatcher) String

◆ MSM_SMILES_STRING

const std::string MSM_SMILES_STRING = "SMILES_String"
inline

User parameter name for the SMILES key associated with a metabolite. (Required for MetaboliteSpectralMatcher) String

◆ MSM_SUM_FORMULA

const std::string MSM_SUM_FORMULA = "Sum_Formula"
inline

User parameter name for the sum formula of a metabolite. (Required for MetaboliteSpectralMatcher) String

◆ NUM_MATCHED_PEAKS

const std::string NUM_MATCHED_PEAKS = "num_matched_peaks"
inline

◆ NUM_OF_DATAPOINTS

const std::string NUM_OF_DATAPOINTS = "num_of_datapoints"
inline

User parameter name for the total number of data points (peaks) in a feature. (Required for MQEvidenceExporter) String

◆ NUM_OF_MASSTRACES

const std::string NUM_OF_MASSTRACES = "num_of_masstraces"
inline

User parameter name for the number of mass traces in a feature. (Required for SiriusExport) String

◆ NUM_PEAKS

const std::string NUM_PEAKS = "num_peaks"
inline

User parameter name for the number of peaks in a spectrum String

◆ OPENPEPXL_BETA_ACCESSIONS

const std::string OPENPEPXL_BETA_ACCESSIONS = "accessions_beta"
inline

User parameter name for the protein accessions of the second peptide in a cross-link String

◆ OPENPEPXL_BETA_PEPEV_END

const std::string OPENPEPXL_BETA_PEPEV_END = "BetaPepEv:end"
inline

User parameter name for PeptideEvidence info for the beta/acceptor peptide: end String

◆ OPENPEPXL_BETA_PEPEV_POST

const std::string OPENPEPXL_BETA_PEPEV_POST = "BetaPepEv:post"
inline

User parameter name for PeptideEvidence info for the beta/acceptor peptide: post String

◆ OPENPEPXL_BETA_PEPEV_PRE

const std::string OPENPEPXL_BETA_PEPEV_PRE = "BetaPepEv:pre"
inline

User parameter name for PeptideEvidence info for the beta/acceptor peptide: pre String

◆ OPENPEPXL_BETA_PEPEV_START

const std::string OPENPEPXL_BETA_PEPEV_START = "BetaPepEv:start"
inline

User parameter name for PeptideEvidence info for the beta/acceptor peptide: start String

◆ OPENPEPXL_BETA_SEQUENCE

const std::string OPENPEPXL_BETA_SEQUENCE = "sequence_beta"
inline

User parameter name for the sequence of the second peptide in a cross-link String

◆ OPENPEPXL_HEAVY_SPEC_MZ

const std::string OPENPEPXL_HEAVY_SPEC_MZ = "spec_heavy_MZ"
inline

User parameter name for the m/z of the heavy spectrum precursor in a labeled cross-linking experiment String

◆ OPENPEPXL_HEAVY_SPEC_REF

const std::string OPENPEPXL_HEAVY_SPEC_REF = "spectrum_reference_heavy"
inline

User parameter name for the spectrum reference of the heavy spectrum in a labeled cross-linking experiment String

◆ OPENPEPXL_HEAVY_SPEC_RT

const std::string OPENPEPXL_HEAVY_SPEC_RT = "spec_heavy_RT"
inline

User parameter name for the RT of the heavy spectrum precursor in a labeled cross-linking experiment String

◆ OPENPEPXL_SCORE

const std::string OPENPEPXL_SCORE = "OpenPepXL:score"
inline

Name of OpenPepXL main score (PSI CV term) String

◆ OPENPEPXL_TARGET_DECOY_ALPHA

const std::string OPENPEPXL_TARGET_DECOY_ALPHA = "xl_target_decoy_alpha"
inline

User parameter name for target/decoy annotation of alpha peptides String

◆ OPENPEPXL_TARGET_DECOY_BETA

const std::string OPENPEPXL_TARGET_DECOY_BETA = "xl_target_decoy_beta"
inline

User parameter name for target/decoy annotation of beta peptides String

◆ OPENPEPXL_XL_MASS

const std::string OPENPEPXL_XL_MASS = "xl_mass"
inline

User parameter name for the mass of a cross-link String

◆ OPENPEPXL_XL_MOD

const std::string OPENPEPXL_XL_MOD = "xl_mod"
inline

User parameter name for the name of a cross-link String

◆ OPENPEPXL_XL_POS1

const std::string OPENPEPXL_XL_POS1 = "xl_pos1"
inline

User parameter name for the 1st position of cross-link (alpha peptide position in a real cross-link, 1st of two positions in a loop-link, modified position in a mono-link) String

◆ OPENPEPXL_XL_POS1_PROT

const std::string OPENPEPXL_XL_POS1_PROT = "xl_pos1_protein"
inline

User parameter name for the 1st cross-link position on the protein String

◆ OPENPEPXL_XL_POS2

const std::string OPENPEPXL_XL_POS2 = "xl_pos2"
inline

User parameter name for the 2nd position of cross-link (beta peptide position in a real cross-link, 2nd of two positions in a loop-link, "-" in a mono-link) String

◆ OPENPEPXL_XL_POS2_PROT

const std::string OPENPEPXL_XL_POS2_PROT = "xl_pos2_protein"
inline

User parameter name for the 2nd cross-link position on the protein String

◆ OPENPEPXL_XL_RANK

const std::string OPENPEPXL_XL_RANK = "xl_rank"
inline

User parameter name for the cross-link rank (ranks of PeptideHits across different PeptideIdentifications) String

◆ OPENPEPXL_XL_TERM_SPEC_ALPHA

const std::string OPENPEPXL_XL_TERM_SPEC_ALPHA = "xl_term_spec_alpha"
inline

User parameter name for the terminal specificity of a cross-link on the alpha peptide (to distinguish a link to the first or last residue side chain from a terminal link) String

◆ OPENPEPXL_XL_TERM_SPEC_BETA

const std::string OPENPEPXL_XL_TERM_SPEC_BETA = "xl_term_spec_beta"
inline

User parameter name for the terminal specificity of a cross-link on the beta peptide (to distinguish a link to the first or last residue side chain from a terminal link) String

◆ OPENPEPXL_XL_TYPE

const std::string OPENPEPXL_XL_TYPE = "xl_type"
inline

User parameter name for the cross-link type, one of: cross-link, loop-link, mono-link String

◆ PEPTIDE_Q_VALUE

const std::string PEPTIDE_Q_VALUE = "peptide q-value"
inline

User parameter name to indicate a peptide q-value String

◆ PRECURSOR_ERROR_PPM_USERPARAM

const std::string PRECURSOR_ERROR_PPM_USERPARAM = "precursor_mz_error_ppm"
inline

User parameter name for precursor mz error in ppm String

Referenced by NucleicAcidSearchEngine::postProcessHits_().

◆ PSM_EXPLAINED_ION_CURRENT_USERPARAM

const std::string PSM_EXPLAINED_ION_CURRENT_USERPARAM = "PSM_explained_ion_current"
inline

User parameter name for annotation of PSMExlpainedIonCurrent String

◆ RANK

const std::string RANK = "rank"
inline

User parameter name for the rank of a peptide hit String

◆ SD

const std::string SD = "SD"
inline

MetaValue key for storing mass trace m/z standard deviation (in Dalton)

◆ SD_ppm

const std::string SD_ppm = "SD_ppm"
inline

MetaValue key for storing mass trace m/z standard deviation (in ppm)

◆ SIGNIFICANCE_THRESHOLD

const std::string SIGNIFICANCE_THRESHOLD = "significance_threshold"
inline

User parameter name for the significance threshold in PeptideIdentification Double

◆ SIRIUS_ANNOTATED_ADDUCT

const std::string SIRIUS_ANNOTATED_ADDUCT = "annotated_adduct"
inline

User parameter name to tell which adduct was considered for this annotated spectrum String

◆ SIRIUS_ANNOTATED_SUMFORMULA

const std::string SIRIUS_ANNOTATED_SUMFORMULA = "annotated_sumformula"
inline

User parameter name to tell which sum formula was considered for this annotated spectrum String

◆ SIRIUS_DECOY

const std::string SIRIUS_DECOY = "decoy"
inline

User parameter name to tell if this annotated spectrum comes from a Sirius/Passatutto generated decoy or an actual target spectrum boolean

◆ SIRIUS_EXACTMASS

const std::string SIRIUS_EXACTMASS = "exact_mass"
inline

FloatDataArray name for exact mass values of Sirius annotated spectra FloatDataArray

◆ SIRIUS_EXPLANATION

const std::string SIRIUS_EXPLANATION = "explanation"
inline

StringDataArray name for most likely fragment explanations of the corresponding peak in the spectrum StringDataArray

◆ SIRIUS_FEATURE_ID

const std::string SIRIUS_FEATURE_ID = "feat_id"
inline

User parameter name to tell if this annotated spectrum comes from a feature (then it contains the feature ID) or a single MS2 spectrum (missing) boolean

◆ SIRIUS_MZ

const std::string SIRIUS_MZ = "mz"
inline

FloatDataArray name for observed m/z values of Sirius annotated spectra FloatDataArray

◆ SIRIUS_PEAKMZ

const std::string SIRIUS_PEAKMZ = "peak_mz"
inline

User parameter name to tell what the contents of the m/z dimension of the annotated spectra contains (mz or exact mass) String

◆ SIRIUS_SCORE

const std::string SIRIUS_SCORE = "score"
inline

User parameter name for Sirius score double

◆ SPECTRUM_REFERENCE

const std::string SPECTRUM_REFERENCE = "spectrum_reference"
inline

User parameter name for the spectrum reference in PeptideIdentification (it is not yet treated as a class attribute) String

◆ TARGET_DECOY

const std::string TARGET_DECOY = "target_decoy"
inline

User parameter name for target/decoy annotation of a PeptideHit, e.g. as annotated by PeptideIndexer. One of: target, decoy, target+decoy String

◆ XFDR_FDR

const std::string XFDR_FDR = "XFDR:FDR"
inline

User parameter name for XL-MS FDR values String