| buildVectorOfNonBondedAtomPairs(const std::vector< std::pair< Atom *, Atom * > > &atom_vector) | CharmmNonBonded | [virtual] |
| CharmmNonBonded() | CharmmNonBonded | |
| CharmmNonBonded(ForceField &force_field) | CharmmNonBonded | |
| CharmmNonBonded(const CharmmNonBonded &charmm_non_bonded) | CharmmNonBonded | |
| clear() | CharmmNonBonded | [virtual] |
| determineMethodOfAtomPairGeneration() | CharmmNonBonded | [virtual] |
| electrostatic_energy_ (defined in CharmmNonBonded) | CharmmNonBonded | [protected] |
| energy_ (defined in ForceFieldComponent) | ForceFieldComponent | [protected] |
| force_field_ (defined in ForceFieldComponent) | ForceFieldComponent | [protected] |
| ForceFieldComponent() | ForceFieldComponent | |
| ForceFieldComponent(ForceField &force_field) | ForceFieldComponent | |
| ForceFieldComponent(const ForceFieldComponent &force_field_component) | ForceFieldComponent | |
| getElectrostaticEnergy() const | CharmmNonBonded | [virtual] |
| getEnergy() const | ForceFieldComponent | [virtual] |
| getForceField() const | ForceFieldComponent | |
| getName() const | ForceFieldComponent | |
| getSolvationEnergy() const | CharmmNonBonded | [virtual] |
| getVdwEnergy() const | CharmmNonBonded | [virtual] |
| isEnabled() const (defined in ForceFieldComponent) | ForceFieldComponent | |
| operator=(const CharmmNonBonded &charmm_non_bonded) | CharmmNonBonded | |
| operator==(const CharmmNonBonded &charmm_non_bonded) | CharmmNonBonded | |
| setEnabled(bool state) (defined in ForceFieldComponent) | ForceFieldComponent | |
| setForceField(ForceField &force_field) | ForceFieldComponent | |
| setName(const String &name) | ForceFieldComponent | |
| setup() | CharmmNonBonded | [virtual] |
| solvation_energy_ (defined in CharmmNonBonded) | CharmmNonBonded | [protected] |
| update() | ForceFieldComponent | [virtual] |
| updateEnergy() | CharmmNonBonded | [virtual] |
| updateForces() | CharmmNonBonded | [virtual] |
| vdw_energy_ (defined in CharmmNonBonded) | CharmmNonBonded | [protected] |
| ~CharmmNonBonded() | CharmmNonBonded | [virtual] |
| ~ForceFieldComponent() | ForceFieldComponent | [virtual] |